Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00539 ATGGCGACGTACTTCCAGGGAAACTCAAATATCCAACCACCTGACGGCTTACAAACCTTAGTTCTGATGAATCCCGCCTACACGCAGTACTCCGACACACCCTCTCCGGCCCCCGGCAACTTCGTCTTCCTCAACGCTCAGGTCGGAAATCCCCTCTATCCCCTCAATCCTCCTCATGCGCCGCCATCTCTCTCTCAGCACTTGGTTGGCGTCCCGCTTTCTGCCGTCACCTCGCCGGCTACCTCCCAAGACCCGAACTCTCTATCCATGCACACCCACCACGATGTTTCTGCCTTGCATGGCTTCATCCCGCGAACACAAAGTAGCTTTTGGAGCACAATTGATCACTCCTCATCGGTGGCGCGTGAAACTACACGCTCTAAGGAAGGACTGTCCCTCAGCCTCTCTTCTCATCCTCCAGGATATGGATTAGTCCAAATTCCATCCCGAGCTCAACGGGAAGTTTGTGGCGAGGATGTCCGTATACCAGGAGGATCACCTTCGTCCGCTTCCGGCCTTAATAACAGCATTCCAGCAATTCGAGACATGTTGCATAGCTCGAAGTACTTGAGAGCAGCTCAGGAGCTTCTCGATGAAGTAGCAAATGTCGGCAACAATGAAGTTAAGAAAGAGACCCTGAAGAAGGCTGACAGTTATCGGACTAAGGTGGAGGAGTCACTGGTGGGTGCTGGAGATAATACAGTCATGGTGGAAGAGGAAGGCAAGCCGGGTTCTGAGCTTTCTGATGCCGAGAGGCAAGAAATCCAGATGAAGAAGACCAAGCTTATTAACATGCTTGTGGAGGTGGAGCAAAGATACAGACAATACCACCATCAAATGCAGATCCTCATTTCCTCTTTCGAACAAGCGGCTGGAATAGGCTCTGCAAGAACTTACACAGCCCTGGCGCTGCAGACAATCTCTAAGCAATTCAGGTGTTTAAAAGACACAATCAGTGCTCAAATTCGAGTGGCAAACAAAAACCTAGGCGAAGAAGACTGCCCCGGAAAACTTGAAGGTTCAAGACTTAGATTTGTAGACCACCATCGTCATCAACAACGGGCTCTTCAGAGCTTGGGAATAATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCCGAGAGATCGGTTTCCGTTCTTCGAGCATGGCTGTTCGAACACTTTCTTCACCCGTATCCAAAAGATTCAGACAAACACATGCTGGCAAAACAGACAGGACTGACGAGAAGTCAGGTTTCGAATTGGTTCATTAATGCGCGAGTTCGTCTATGGAAGCCAATGGTAGAAGAAATGTACATGGAGGAAATAAAGGACCAAGAACAGACCTTATCAGCAGAAAAAAGCAGCAAAAGCAATGGGGAGACAACTTCCAAATCCACAACACCAACGCCACAAGAAAAGAGTCCTCCAACCAAAAATCAACTTTCAAGTCTCAATTCGAGACACGAAGATTCTTTGCATCATCATGCTCCCCCTGCAATTTCTTTTTCTTCCACTGCCACATCAGTTGAAGACGTGAATGTTCGAAGCCAATCCGGATTTTGGCTCATTGGGTCATCAGAACTGGATGGAATCACACAAGGAAGTCCAAAGAGGCAACGGATTGCTGAAATGATACAGTCCCCAATCAGTATGCCTATAAACATTGATACTAAGCCAGGGGAAGCCAATATTGAGCAAGTTTCTATGAAGTTTAACAATGGGAGGGACAGCAGAGATGGCTATTCATTCACTGGAGGTCAAGCTAATTTTGTCGGAGGTTTTGGGCAATACCCAATTGCAGATATTGACAGGTTCGATGCAGAGCCTTTCACGACAGGATTTTCCGGCAATGGTGTTTCTCTCACCCTTGGACTTCACCACTCAGAAAATCTCTCTTTATCGATGGCCAATCAAAGTTTCCTTCCAAACCAGACTATAAATTTTGGGAGACGAGTTGACATTGGTGAACCAAATGGTTTTGATGCAATTAACATATCAACACCACACTCCGCATCTGCATTTGACAGCATCGATATACAAAACCGAAAAGGATTTGTGGTGCAATTGTTGCCGGACTTTGTGGCTTGA 2073 47.37 MATYFQGNSNIQPPDGLQTLVLMNPAYTQYSDTPSPAPGNFVFLNAQVGNPLYPLNPPHAPPSLSQHLVGVPLSAVTSPATSQDPNSLSMHTHHDVSALHGFIPRTQSSFWSTIDHSSSVARETTRSKEGLSLSLSSHPPGYGLVQIPSRAQREVCGEDVRIPGGSPSSASGLNNSIPAIRDMLHSSKYLRAAQELLDEVANVGNNEVKKETLKKADSYRTKVEESLVGAGDNTVMVEEEGKPGSELSDAERQEIQMKKTKLINMLVEVEQRYRQYHHQMQILISSFEQAAGIGSARTYTALALQTISKQFRCLKDTISAQIRVANKNLGEEDCPGKLEGSRLRFVDHHRHQQRALQSLGIIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQTLSAEKSSKSNGETTSKSTTPTPQEKSPPTKNQLSSLNSRHEDSLHHHAPPAISFSSTATSVEDVNVRSQSGFWLIGSSELDGITQGSPKRQRIAEMIQSPISMPINIDTKPGEANIEQVSMKFNNGRDSRDGYSFTGGQANFVGGFGQYPIADIDRFDAEPFTTGFSGNGVSLTLGLHHSENLSLSMANQSFLPNQTINFGRRVDIGEPNGFDAINISTPHSASAFDSIDIQNRKGFVVQLLPDFVA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23334895 23337305 + BLOR04558 Blo12g00539 67800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00539 690 SMART HOX_1 367 431 IPR001356 GO:0003677
Blo12g00539 690 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 647 - -
Blo12g00539 690 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Blo12g00539 690 Gene3D - 363 441 - -
Blo12g00539 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 647 - -
Blo12g00539 690 Coils Coil 252 272 - -
Blo12g00539 690 MobiDBLite consensus disorder prediction 440 498 - -
Blo12g00539 690 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Blo12g00539 690 CDD homeodomain 367 428 IPR001356 GO:0003677
Blo12g00539 690 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Blo12g00539 690 Pfam Associated with HOX 183 319 IPR006563 -
Blo12g00539 690 SMART prehox3 177 320 IPR006563 -
Blo12g00539 690 MobiDBLite consensus disorder prediction 446 481 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g01167 Blo12g00539 CCT
Blo09g00467 Blo12g00539 CCT
Blo01g01247 Blo12g00539 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01577 Blo-Chr1:55576788 Blo12g00539 Blo-Chr12:23334895 2.61E-90 dispersed
Blo03g00346 Blo-Chr3:7592596 Blo12g00539 Blo-Chr12:23334895 8.65E-53 dispersed
Blo05g00608 Blo-Chr5:16317913 Blo12g00539 Blo-Chr12:23334895 8.37E-74 dispersed
Blo12g00539 Blo-Chr12:23334895 Blo12g00899 Blo-Chr12:27179806 4.96E-77 dispersed
Blo04g01016 Blo-Chr4:13443518 Blo12g00539 Blo-Chr12:23334895 1.02E-73 transposed
Blo17g00292 Blo-Chr17:3076413 Blo12g00539 Blo-Chr12:23334895 5.18E-50 transposed
Blo01g01247 Blo-Chr1:47397235 Blo12g00539 Blo-Chr12:23334895 0 wgd
Blo12g00539 Blo-Chr12:23334895 Blo09g00467 Blo-Chr9:15843844 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13014 PF07526 POX 3.40E-45 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00539 - - jre:108982860 853.588