Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00540 ATGACGGACCCGGCGGCGTCCTCTCCGGCTGCACAACTCAGCAAATTCTTCAAAGACGTCGAGGCCATTAAGGAAGATCTCAAAGAGCTGGAGAGCCGCCGTGTAAATCTCCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAAAGAGCTGAGGTCGAACATGGACTCTGACGTTTCGCTGGCTCTGAGTAAGGCGAAGCTGATCAAGGTCCACCTCGAGGCTCTCGACCGGTCCAACGCCGAAAATCGAAGTTTGCCCGGTTGCGGCCCGGGGTCGTCGTCGGACCGGACGCGGACCTCCCTTTTGAATGGGCTGAGAAAGAATTTGAAGGAGTCGATGGAGAACTTCAGCGCTCTGAGGCAGAAGATTTCGTCTGAGTACAGAGAGACTGTACAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACTGTTGATCTTTTGATCTCCTCAGGCGAAAGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGGGAGAGGGAGAATTGTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTGCACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAGCAGCTCGACGACATCGAGAGCCATTTGGGTCGTGCTCACTCCATGGTCGTAGACGGCACCAAGCAGTTGCAGACAGCGAGGGCCCACCAGAAGAGCACCAGAAAATGGACTGTTATTGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCAGCCATGGAAGTGGTAG 840 52.62 MTDPAASSPAAQLSKFFKDVEAIKEDLKELESRRVNLQSSHEKSKTLHNAKAVKELRSNMDSDVSLALSKAKLIKVHLEALDRSNAENRSLPGCGPGSSSDRTRTSLLNGLRKNLKESMENFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRIVDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHLGRAHSMVVDGTKQLQTARAHQKSTRKWTVIAIIILLIIILIIVLSLQPWKW 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23357511 23358443 + BLOR04559 Blo12g00540 67801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00540 279 PANTHER SYNTAXIN 1 273 IPR045242 -
Blo12g00540 279 CDD SNARE_syntaxin1-like 182 244 - -
Blo12g00540 279 CDD SynN 13 170 IPR006011 GO:0016020
Blo12g00540 279 SMART SynN_4 8 134 IPR006011 GO:0016020
Blo12g00540 279 Coils Coil 179 206 - -
Blo12g00540 279 SUPERFAMILY t-snare proteins 13 238 IPR010989 GO:0016020|GO:0016192
Blo12g00540 279 Gene3D - 10 143 - -
Blo12g00540 279 Pfam Syntaxin 15 218 IPR006011 GO:0016020
Blo12g00540 279 Coils Coil 108 128 - -
Blo12g00540 279 SMART tSNARE_6 178 245 IPR000727 -
Blo12g00540 279 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 245 IPR000727 -
Blo12g00540 279 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 1 273 - -
Blo12g00540 279 Pfam SNARE domain 219 271 IPR000727 -
Blo12g00540 279 Gene3D - 178 275 - -
Blo12g00540 279 ProSitePatterns Syntaxin / epimorphin family signature. 189 228 IPR006012 GO:0005484|GO:0006886|GO:0016020
Blo12g00540 279 Coils Coil 13 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00540 Blo-Chr12:23357511 Blo14g00365 Blo-Chr14:3972538 2.83E-114 dispersed
Blo12g00540 Blo-Chr12:23357511 Blo09g00464 Blo-Chr9:15786007 3.18E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00540 K08486 - zju:107406871 415.616