Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g00540 | ATGACGGACCCGGCGGCGTCCTCTCCGGCTGCACAACTCAGCAAATTCTTCAAAGACGTCGAGGCCATTAAGGAAGATCTCAAAGAGCTGGAGAGCCGCCGTGTAAATCTCCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAAAGAGCTGAGGTCGAACATGGACTCTGACGTTTCGCTGGCTCTGAGTAAGGCGAAGCTGATCAAGGTCCACCTCGAGGCTCTCGACCGGTCCAACGCCGAAAATCGAAGTTTGCCCGGTTGCGGCCCGGGGTCGTCGTCGGACCGGACGCGGACCTCCCTTTTGAATGGGCTGAGAAAGAATTTGAAGGAGTCGATGGAGAACTTCAGCGCTCTGAGGCAGAAGATTTCGTCTGAGTACAGAGAGACTGTACAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACTGTTGATCTTTTGATCTCCTCAGGCGAAAGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGGGAGAGGGAGAATTGTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTGCACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAGCAGCTCGACGACATCGAGAGCCATTTGGGTCGTGCTCACTCCATGGTCGTAGACGGCACCAAGCAGTTGCAGACAGCGAGGGCCCACCAGAAGAGCACCAGAAAATGGACTGTTATTGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCAGCCATGGAAGTGGTAG | 840 | 52.62 | MTDPAASSPAAQLSKFFKDVEAIKEDLKELESRRVNLQSSHEKSKTLHNAKAVKELRSNMDSDVSLALSKAKLIKVHLEALDRSNAENRSLPGCGPGSSSDRTRTSLLNGLRKNLKESMENFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRIVDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHLGRAHSMVVDGTKQLQTARAHQKSTRKWTVIAIIILLIIILIIVLSLQPWKW | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 23357511 | 23358443 | + | BLOR04559 | Blo12g00540 | 67801 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g00540 | 279 | PANTHER | SYNTAXIN | 1 | 273 | IPR045242 | - | |
Blo12g00540 | 279 | CDD | SNARE_syntaxin1-like | 182 | 244 | - | - | |
Blo12g00540 | 279 | CDD | SynN | 13 | 170 | IPR006011 | GO:0016020 | |
Blo12g00540 | 279 | SMART | SynN_4 | 8 | 134 | IPR006011 | GO:0016020 | |
Blo12g00540 | 279 | Coils | Coil | 179 | 206 | - | - | |
Blo12g00540 | 279 | SUPERFAMILY | t-snare proteins | 13 | 238 | IPR010989 | GO:0016020|GO:0016192 | |
Blo12g00540 | 279 | Gene3D | - | 10 | 143 | - | - | |
Blo12g00540 | 279 | Pfam | Syntaxin | 15 | 218 | IPR006011 | GO:0016020 | |
Blo12g00540 | 279 | Coils | Coil | 108 | 128 | - | - | |
Blo12g00540 | 279 | SMART | tSNARE_6 | 178 | 245 | IPR000727 | - | |
Blo12g00540 | 279 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 183 | 245 | IPR000727 | - | |
Blo12g00540 | 279 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 1 | 273 | - | - | |
Blo12g00540 | 279 | Pfam | SNARE domain | 219 | 271 | IPR000727 | - | |
Blo12g00540 | 279 | Gene3D | - | 178 | 275 | - | - | |
Blo12g00540 | 279 | ProSitePatterns | Syntaxin / epimorphin family signature. | 189 | 228 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Blo12g00540 | 279 | Coils | Coil | 13 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo12g00540 | Blo-Chr12:23357511 | Blo14g00365 | Blo-Chr14:3972538 | 2.83E-114 | dispersed | |
Blo12g00540 | Blo-Chr12:23357511 | Blo09g00464 | Blo-Chr9:15786007 | 3.18E-144 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g00540 | K08486 | - | zju:107406871 | 415.616 |