Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00549 ATGGCGGTCTTAGACGAAGAGTGTTCGTCTGCGCAATCCCGATCGTCTTCTTTAGCATCCAGTAGCACTCACTACCTTGCCAAAAGTGTTCTCAGAGGCAGCGTCGTTCTTCAGGTCTTGTACGGTCACATACGCTCTCCGGCCTCTCTCGACATCGTCTTTGGCAAGGAGACATCCATAGAGTTGGTAATTATTGGTGAAGATGGAGTTGTACAATCAGTTTGTGAGCAGGCTGTATTTGGGATAATTAAAGATCTTTCTATCTTAAGATGGAATGAGAAGTTTCGAGCACCAAATGCACAGTTGCTTGGAAGAGATCTGCTGGTAGTTATATCTGATTCTGGGAAACTCTCATTTCTTACATTTTGCAATGAAATGCACAGGTTTTTTCCACTAACGCACATCCAGCTTTCCAATCCCGGAAACTCAAGAAATCATCTTGGAAGAATGCTGGCTACTGATTCCCTAGGCTGTTTCATCGCTGCTAGTGCATATGAAAACTCCTTGGCGTTGTTCTGTACTTCAGTTTCTGCTGGCAATGAGATCATTGAAAAGAAAATAATTTATCCTTCCATGGAAGGAGATTCCAGTGTTGCAAGAAGTATGCAGGAAAATCAAATACGCGGTACTATATGGAGCATGTGCTTTATTTCTCAAGATCCTAGCCAACCAAGTAAGGAGAATAATCCTGTACTCGCCATTCTTTTAAATAGAAAGAGAGCGTTGCTGAATGAAGTGCTATTATTGGGTTGGAATGTTCGAGAAAACAATCTAGTTGCTATTTCTCAGTATATAGAAGCTGGGCCTCTGGCACATGATATTGTTGAAGTTCCTCATTCTTATGGATTTGCATTTCTATTTAGAGTTGGTGATGCTCTTTTAATGGACCTTCGAGATGCTCGCAACCCCTGTTGTGTTTATAGAACAAGCCTTAATTTCCTTCCTGGTGCAGTTGAGGTGCAAAATGCAACTGAAGAATCGTATAAGGTTCAAGACATCGACGATGAAGGACTATTTAATGTGGCTGCAAGTGCATTGCTGGAGCTTGGGGACTACGATCCCATGTACATAGATGCTGATAGTGGCAATCTGCATCCATCTTTCAAACATGTCTGCTCATGGAGCTGGGATCCTGAAAATGTTAACAACCCAAGAATGATTTTCTGTGTGGATACGGGGGAACTTTTCATGATCGAAATTTCTTTTGATTCTGATGGACTCAAAGTCCATTTATCTGCTTGTCTCCACAAAGGTGTACCCTGCAAAGAACTTTTGTGGGTTAAAGGTGGATTTGTTGCTGCACTTGTAGAGATGGGGGATGGGATGGTCCTCAAATTGGATAATGGAAGACTGCTTTACACAAGTCCTATTCAAAGTATTACCCCCATCTTAGATATGTCTATTGTAGACTCTCTTGATGAGAAACATGACCAAATGTTTGCCTGCTGTGGAATGGCACCAGACGGATCACTAAGGATTATTAGAAGTGGTATTAGTGTGGAGAAATTATTGAAAACTCCTGTTTATCATGGCATATCTTGTACTTGGGCAATACGAATGAAGGTTACTGATTGTTATCATTCATTTTTGGTACTCTCATTTGTCGAAGAGACCAGGGTGTTATCAGTTGGATTAAGCTTTGGTGATGTTACTGATTCAGTTGGTTTCCTTCCTGATGTTTGTACGTTAGCCTGTGGTCTATTCAGTGATGGTTTGTTGATCCAGATTTATAAAGATGCAGTTAGATTATGTTTGCCGACAAGTATTGCTCATTCTGAAGGTATCACCTTAGCTTCTCCAGTATGCGCATCTTGGTCTCCAAATAAACATAGTGTCAGTTTGGGGGCAGTAGGACATAATTTCATTGCCATTTCTACTTCTAGTCCATGTTTTTTGTTTATTCTGGGAGTTAGATTACTTTCAAAATATAATTATGAGATATATGAAATGTATCATGTCAGATTGCTCAATGAATTGTCATGCATATCAATTCCCCAAAAAAGTATAGAGCAAAAGCAGCTAAATTCTTTTATCAGATCAGTGAGCTCTTGCCATATGACTACTTTTCCAGATCAAGATGAACTTAGCAGTACTTTTGTAGTTGGCACACATTGCCCTTCTGTGGAAATCTTTTCTTTTATTCCTGGTGGAAGCCTAAGAGTTACTGCCACTGTAAATATTTCATTAATGAGCACCTTTGGGACTGCCATTAGTGGCTGCATCCCTCAAGATGTACGGATTGTATTAGCTGATAGGTTTTATGTTCTTTCTGGGTTGAGGAATGGGATGCTGCTTCGATTTGAGTTTCCTGGAGTCTCTGAAATGTTATCGTCAAATTCACCGAGTCTTAGTTCTTCTTTCCAGGACAGATCATTGAATGAGTCATCTCCAGATTCTTTTGGTCCACATTTGTGTGATGTTAGTCCATCTGAAAAGCATAGAGACAATTGTCCTACCAATCTTCAGTTGATCGCTGTTCGACGAATTGGCATTACTCCAGTTTTTCTGGTCCCATTGAGTGATTCACTAGATGCAGATATAATTGCTCTAAGTGATCGACCTTGGTTGTTGCATAGTGCAAGGCACAGCCTCTCGTATTCCTCCATTTCATTTCAACCATCAACACATGTGACTGCTGTGTGTTCCCCTGAATGCCCTAATGGAATTCTATTTGTTGCTGACAGCTGTCTGCATTTGGTGGAGATGGCTCCTAGTAAAAGGCTTAATGTGCAGAAATTTCATCTAGGAGGCACACCAAGGAAGGTTTTATTTCACGCTGAATGTAAGTTATTGCTTGTGATGAGGACTGATATAAGTAATGATGCCTGTGCATCTGATGTATGCTGCGTGGATCCCTTTAGTGGGTCGGTGCTGTCATCTTTTAAACTTGAGCTTGGGGAAGTTGGAAAATCCATGGAGTTTGTGAAGGTTGGAAATGAACAGGTTCTCTTGATTGGAACCAGTATGTCATCTGGCCCAGCCATAATGCCCAGTGGTGAAGCTGAGAGTACCAAGGGTCGTCTGCTTGTTCTCTGCCTTGAACGCTTGCAAAGTTCCGACAGCATTTCAATGACATCCAGTTCAAAAGTGGGGCCATATTCTCAAAGAACTTCGCCATTTTGTGATACTGCTGGATATGCTGCAGAACAACCAAGCATAAGCCCATGCAGCAGTCCTGATGAAATTAACTATGATGGAATGACCGAAGTCTGGCAGTTACGATTGGCATATTCAACTGTTTTACCAGGAGTAGTACTTGCCATTTGTTCATATCTTGATCGGTACTTCTTGGCTTCTGCGGGTAATGCTTTTTACGTATGTGGTTTTCCAAATGATAATCCCCAGAAGTTGAGAAGGTTTGCCATTGGAAGGACGAGGTTTATGATTTTGTCTTTGACTTCATATATAACTAGAATTGCTGTTGGAGATTGCCGTGATGGTGTTCTTTTCTACTTTTATCATGAGGAAGCAAGAAGGCTGGAACAAGTTTACTGTGATCCATCGCAGAGGTTAGTCGCTGACTGTATCCTAACTGATGCTGACACTGCTGTTGTTTCAGATCGCAAGGGAAGCATTGCCTTCCTTTCTGTTTCTGATTGTTTAGAAGATTCCGCAAGTCCAGAATGCAATTTAACTGTAAACTGTGCTTATTATATGGGCGAGATAGCTATGAGCATCAGAAAGGGTTCGTTTTTATATAAACTTCCTGCTGATGATGTTATGAAAGGCTATAGCAACCCTAATGCTTATATTGACTCATCACGCAACACTATTGTCGCGAGTACGTTGTTGGGCAGCATTATAATCTTCCAGCCTATTTCAAGTGAAGAATATGAACTCTTACGAAGTGTCCAAGCTAAACTTGTTGTTCATCCATTGACTTGTCCCGTTCTGGGGAATGATCATTATGAGTTCCGTAGCCGTGAAAACCCAGTGGGAGTTCCGAATATTCTTGATGGCGACATGCTGAATCAGTTTTTGGAGCTCACCAGCAAACAGCAAGAGGCTGTTTTATCATCACCTCCTTCCTCACGAGACCATATCAAGTCTAGTTTGAAGCCGCTACCTTCGTCTATCTCTGCCGCCTATGTTGTGCAACTCCTTGAACGAGTTCATTATGCTCTGAATTGA 4131 41.39 MAVLDEECSSAQSRSSSLASSSTHYLAKSVLRGSVVLQVLYGHIRSPASLDIVFGKETSIELVIIGEDGVVQSVCEQAVFGIIKDLSILRWNEKFRAPNAQLLGRDLLVVISDSGKLSFLTFCNEMHRFFPLTHIQLSNPGNSRNHLGRMLATDSLGCFIAASAYENSLALFCTSVSAGNEIIEKKIIYPSMEGDSSVARSMQENQIRGTIWSMCFISQDPSQPSKENNPVLAILLNRKRALLNEVLLLGWNVRENNLVAISQYIEAGPLAHDIVEVPHSYGFAFLFRVGDALLMDLRDARNPCCVYRTSLNFLPGAVEVQNATEESYKVQDIDDEGLFNVAASALLELGDYDPMYIDADSGNLHPSFKHVCSWSWDPENVNNPRMIFCVDTGELFMIEISFDSDGLKVHLSACLHKGVPCKELLWVKGGFVAALVEMGDGMVLKLDNGRLLYTSPIQSITPILDMSIVDSLDEKHDQMFACCGMAPDGSLRIIRSGISVEKLLKTPVYHGISCTWAIRMKVTDCYHSFLVLSFVEETRVLSVGLSFGDVTDSVGFLPDVCTLACGLFSDGLLIQIYKDAVRLCLPTSIAHSEGITLASPVCASWSPNKHSVSLGAVGHNFIAISTSSPCFLFILGVRLLSKYNYEIYEMYHVRLLNELSCISIPQKSIEQKQLNSFIRSVSSCHMTTFPDQDELSSTFVVGTHCPSVEIFSFIPGGSLRVTATVNISLMSTFGTAISGCIPQDVRIVLADRFYVLSGLRNGMLLRFEFPGVSEMLSSNSPSLSSSFQDRSLNESSPDSFGPHLCDVSPSEKHRDNCPTNLQLIAVRRIGITPVFLVPLSDSLDADIIALSDRPWLLHSARHSLSYSSISFQPSTHVTAVCSPECPNGILFVADSCLHLVEMAPSKRLNVQKFHLGGTPRKVLFHAECKLLLVMRTDISNDACASDVCCVDPFSGSVLSSFKLELGEVGKSMEFVKVGNEQVLLIGTSMSSGPAIMPSGEAESTKGRLLVLCLERLQSSDSISMTSSSKVGPYSQRTSPFCDTAGYAAEQPSISPCSSPDEINYDGMTEVWQLRLAYSTVLPGVVLAICSYLDRYFLASAGNAFYVCGFPNDNPQKLRRFAIGRTRFMILSLTSYITRIAVGDCRDGVLFYFYHEEARRLEQVYCDPSQRLVADCILTDADTAVVSDRKGSIAFLSVSDCLEDSASPECNLTVNCAYYMGEIAMSIRKGSFLYKLPADDVMKGYSNPNAYIDSSRNTIVASTLLGSIIIFQPISSEEYELLRSVQAKLVVHPLTCPVLGNDHYEFRSRENPVGVPNILDGDMLNQFLELTSKQQEAVLSSPPSSRDHIKSSLKPLPSSISAAYVVQLLERVHYALN 1376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23477629 23497560 + BLOR04568 Blo12g00549 67810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00549 1376 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
Blo12g00549 1376 Pfam CPSF A subunit region 1072 1328 IPR004871 GO:0003676|GO:0005634
Blo12g00549 1376 Gene3D - 498 906 IPR015943 GO:0005515
Blo12g00549 1376 Gene3D - 35 458 IPR015943 GO:0005515
Blo12g00549 1376 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 19 1373 - -
Blo12g00549 1376 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 19 1373 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo09g00352 Blo12g00549 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00549 Blo-Chr12:23477629 Blo13g00748 Blo-Chr13:30256087 3.29E-13 dispersed
Blo12g00549 Blo-Chr12:23477629 Blo04g00293 Blo-Chr4:2267751 8.58E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00549 K12830 - jre:109011914 1949.1