Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00557 ATGCAGTCCGATAACTCGGAGCTCTACAGATTGCTCGCCGGAAATGGATTCTTTGACGTCGGACGGAAAAGCTTCTGCAGTTCTTCCTCGTACTACCCTCTCGATCAAATTTCTGGAACGCCAGACACGCTTCCATCTGCGCATGAAAGAGCTCTCGCTGCTCTCAGAAATCATAAGGAAGCTGAGAAGAGGAGGAGAGAGAGAATTAATTCGCACCTCGACAAGCTTCGGAATCTTCTTTCCTGTAATTCCAAAACAGACAAAGCTTCTCTTCTTGCAAAAGTTGTTCAACGCGTGAAAGAACTAAAGCAACAAGCTTCTGAAATCTCTGGAATCGAGACTTTCCCATCAGAAACCGATGAAATCTCTGTGCTATCCGGCGATTTATCCGGCGACGGGAGATTGATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCCGACCTCATACCAGACCTCATCGAAATCCTCCACTCTCTCCACTTGAAGACTCTAACAGCTGAAATGGCGACCCTTGGAGGAAGAACCAGAAACATTCTCGTTGTTGCCCCCGACAAAGATTGCAGCGTTGAATCGGTGCATTTCCTGCAAAACTCATTGAAATCTCTGCTTGAAAGTTCCAATCCTAGCGAAAGATCGAAGAGAAGGCGGATTTCAGATGGCCATGACCGATCTTGA 678 46.9 MQSDNSELYRLLAGNGFFDVGRKSFCSSSSYYPLDQISGTPDTLPSAHERALAALRNHKEAEKRRRERINSHLDKLRNLLSCNSKTDKASLLAKVVQRVKELKQQASEISGIETFPSETDEISVLSGDLSGDGRLIFKASLCCEDRSDLIPDLIEILHSLHLKTLTAEMATLGGRTRNILVVAPDKDCSVESVHFLQNSLKSLLESSNPSERSKRRRISDGHDRS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23600040 23601240 + BLOR04576 Blo12g00557 67818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00557 225 Coils Coil 59 79 - -
Blo12g00557 225 MobiDBLite consensus disorder prediction 206 225 - -
Blo12g00557 225 CDD bHLH_AtAIG1_like 49 124 - -
Blo12g00557 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Blo12g00557 225 SMART finulus 59 108 IPR011598 GO:0046983
Blo12g00557 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Blo12g00557 225 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 220 - -
Blo12g00557 225 Gene3D - 49 111 IPR036638 GO:0046983
Blo12g00557 225 PANTHER TRANSCRIPTION FACTOR BHLH30 4 220 IPR045847 GO:0003700|GO:0006355
Blo12g00557 225 MobiDBLite consensus disorder prediction 208 225 - -
Blo12g00557 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 111 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00122 Blo-Chr11:913347 Blo12g00557 Blo-Chr12:23600040 1.06E-110 dispersed
Blo12g00557 Blo-Chr12:23600040 Blo16g01050 Blo-Chr16:38996030 1.01E-43 dispersed
Blo12g00557 Blo-Chr12:23600040 Blo06g00953 Blo-Chr6:32757026 1.37E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13015 PF00010 HLH 1.60E-09 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00557 - K22484 qsu:111998080 315.849