Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00563 AGTGAAATGGGTGTGGGAGGAGAGTCTAGTTTCCATGTCTTAGCAGTTGATGACAGTGTAATTGACAGGAAGATGATTGAGAGGCTTCTGAGGATTTCTTCTTTTCATGTCACCACAGTTGATTCTGGAAGCAAGGCTTTAGAATTTCTTGGCTTCCATGAAAATGACGAAGTGGAAGTGAATCTCATAATTACAGATTACTGTATGCCTGGAATGACCGGCTATGATTTGCTGAAGAAAATTAAGGCAAGCTTTAATTTCCTGGTTGTGCAAAATCTTATAGAAAGATGCTTGCAGCTGTATATGAACCAGAAGGAAGTTACAGAAATGCTTTTAGATCAGGCAAAAATTGAACCAGGTTTTACTGAACTTGTTTGGCAAAAGCTAGAAGAAGAAAATCGTGAATTCTTCAAAGCTTATTATTTAAGATTGGTCGTGAAGCACCAAATTATCGAGTTCAACAGGCTGCTAGAGCAACAGGTGCAAATGATGCACCAGATTCATCCATCTGCTGTCAATTCCCTGCCCATTTCAAATGGCTCCCATGTCCCACAATTGCGCCCGAATACTACTTGCTATGCAACTGAACATACTGGGCATTCTCTGAAACATGAAAACATGCACAATTCAATGAGTTCCGGCTTAGTACATCAAATTTCCAATGGTTTACAGTCAAGTGTCCACCCTGCAGTTAACATGCAAGCACATGCCAGTGTGGATGCCTCACCAAGCGTGCTGTCATCTCAAGGCGCAAACATAGGGATGATGCAGGGTTTAAATGGAAGGATGATAAAATCAGAAACTGGGAATTCAGACAGCTATTATATGTTTGGCACTGAGGGTGGTGTTCTTAATGCCCGTCCATCAATTGGTGATGCAACTGTGGGATCTTTTGCTAGGGTAGAGTCCTGTGCGCAACCTTTGGACGAGTCATTTTTGGAAACAGATACTTCACCATTTGGATTTCTTAGTCAGATTCCTCGTAATTTCAGTCTCTCAGATCTTACAGCTGACTTTGCTCAAAGTACAGATATACTGGAGAGCTACGCAAGGTCTCCTTTTCTGGCGACAGAAAGTGACAAATTTCTAGATAGTAGTGAAAGAGATCATCATGGCAGTAAAAGACTGGATCCTATAGCTGAAACCTTGAGTTACGAAGGTTTTGGAAGTGATTAG 1176 41.41 SEMGVGGESSFHVLAVDDSVIDRKMIERLLRISSFHVTTVDSGSKALEFLGFHENDEVEVNLIITDYCMPGMTGYDLLKKIKASFNFLVVQNLIERCLQLYMNQKEVTEMLLDQAKIEPGFTELVWQKLEEENREFFKAYYLRLVVKHQIIEFNRLLEQQVQMMHQIHPSAVNSLPISNGSHVPQLRPNTTCYATEHTGHSLKHENMHNSMSSGLVHQISNGLQSSVHPAVNMQAHASVDASPSVLSSQGANIGMMQGLNGRMIKSETGNSDSYYMFGTEGGVLNARPSIGDATVGSFARVESCAQPLDESFLETDTSPFGFLSQIPRNFSLSDLTADFAQSTDILESYARSPFLATESDKFLDSSERDHHGSKRLDPIAETLSYEGFGSD 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23828298 23834807 + BLOR04582 Blo12g00563 67824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00563 391 PANTHER OS02G0137100 PROTEIN 86 391 IPR006476 -
Blo12g00563 391 SUPERFAMILY CheY-like 10 90 IPR011006 -
Blo12g00563 391 Gene3D - 12 114 - -
Blo12g00563 391 Pfam Response regulator receiver domain 13 84 IPR001789 GO:0000160
Blo12g00563 391 Pfam Plant protein 1589 of unknown function (A_thal_3526) 90 141 IPR006476 -
Blo12g00563 391 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 89 143 IPR006476 -
Blo12g00563 391 PANTHER - 86 391 - -
Blo12g00563 391 ProSiteProfiles Response regulatory domain profile. 12 142 IPR001789 GO:0000160
Blo12g00563 391 SMART REC_2 11 115 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo09g00375 Blo12g00563 CCT
Blo07g01228 Blo12g00563 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00241 Blo-Chr1:2966993 Blo12g00563 Blo-Chr12:23828298 6.91E-07 dispersed
Blo02g00329 Blo-Chr2:3325328 Blo12g00563 Blo-Chr12:23828298 7.95E-33 dispersed
Blo07g01228 Blo-Chr7:32326536 Blo12g00563 Blo-Chr12:23828298 1.19E-84 dispersed
Blo11g00883 Blo-Chr11:17329986 Blo12g00563 Blo-Chr12:23828298 2.90E-26 dispersed
Blo12g00225 Blo-Chr12:14529292 Blo12g00563 Blo-Chr12:23828298 7.19E-07 dispersed
Blo12g00563 Blo-Chr12:23828298 Blo16g00206 Blo-Chr16:4630507 2.71E-28 dispersed
Blo12g00563 Blo-Chr12:23828298 Blo09g00375 Blo-Chr9:14523871 8.43E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13018 PF00072 Response_reg 6.70E-12 CL0304 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00563 - - cit:102607807 395.971