Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00580 ATGGCTCACTCCCATCAACACGCGCCCAGCATATTCGAAGTTATGAGTGGCCATTCTCCAGTCTATAACGGCGAGTACCCAGCCTTCTCTACTCCCGGCGATGCTCCCACTCCAAAACCAGTAGTTGGATCTTGTCGGCCAGAGAGCCAGTTCTCATCTACCATTCATAACTCGCGACGTCATTTTCTTTCTGAACATATTAGTTGGCTTGATATCTTCGATTTCTTCTTAGTTTTGTTCTGGATGTCTTTTTTCCCCCTTCAGGCAAAGGCATCAAAGCAGATCGGCGGACGTCAAGTTTGCCAAATCTGCAGCGACTCTGTCGGAAAAACTGTTGATGGGGAGCCGTTTGTTGCGTGCAATGTTTGTAATTTTCCTGTTTGTAGACCCTGCTATGAGTATGAAAGAAAGGATGGAAATAAGTCCTGTCCTCAATGCAAGACTAAATACAAGTGGCTTAAAGGAAGCCCTCTACTTAATGGGGAAGAAGGAGACGATTCTGATGTTAATGGAGGGGCGAATGCTCCCAATTACAATTCTAGTGAGCGAGATATGAAGTATAAGCTACCTGAACGTACGCTTAGTTGGGATACAAACTATGATAAAGAAGGAGCCTTCAATCATATTCCTTTGCTCACCACTGGACGTTCTGTTTCTGGCGACCTATCAGCTGCATCCCCTGAACGCCTTTCAATGGCGTCTCCAGAAAGCTTGAGCAGGACTAATTATAGAGTGATGGACCCTTCGAGAGAGGCTGGGTCGAATGGACTTGGCGGTGTTGCCTGGAAAGAGAGAATTGATGGTTGGAAGATGAAGCAGGAGAAGAGTCATCCTCCAATGAGTAGCCATGCTCCTTCTGAAGGTAGAGGAGGCGCAGACTTTGATGCCAGTACTGATATTGTTATGGATGATTCTTTGCTAAATGATGAAGCGCGCCAGCCTTTATCAAGGAAGGTTTCGGTTCCATCCTCCAGGATCAATCCTTACAGGATGGTTATAGTTCTACGTCTCGCTATTCTTTCCATCTTCCTCCACTACCGTTTGACAAACCCAGTTCCCAATGCATATGCTTTGTGGTTGATATCTGTCATTTGTGAGATATGGTTTGCATTTTCATGGATTTTGGATCAATTCCCCAAGTGGCTCCCTGTGAACCGCGAGACATATCTTGATAGGCTAGCACTGAGATACGATAGAGAAGGAGAACCTTCTCAGTTGGCGGCTGTAGACATTTTTGTGAGTACGGTTGACCCTCTAAAGGAACCTCCTCTTGTCACGGCCAATACTGTTTTGTCTATTCTTGCAGTGGACTACCCAGTCGACAAAGTTTCTTGCTATGTCTCAGACGATGGAGCTGCTATGTTGACATTTGAAGCTTTGTCTGAAACATCCGAATTTGCAAGAATATGGGTTCCTTTCTGCAAAAAATATAACATTGAGCCAAGAGCTCCAGAGTGGTATTTTTCAAAGAAGATTGACTATTTGAAAGATAAGGTTCAACCATCATTTGCCAAAGATCGAAGGGTGATGAAGAGAGAGTACGAGGAGTTTAAAATACGAATCAATGTACTTGTTGCAAAGGCGCAAAAGATTCCAGATGAGGGGTGGATCATGCAAGATGGAACCCCTTGGCCTGGAAATAACACCAGAGACCATCCAGGAATGATCCAGGTTTTCCTAGGACATAGTGGAGGGCTCGACAGTGAGGGTAATGAGCTACCCCGGCTAGTGTATGTATCTCGTGAGAAGCGGCCTGGATTTCAGCACCACAAGAAGGCTGGTGCCATGAACGCACTTGTTCGTGTGTCGGCCGTGCTTACAAATGGACCCTTCTTATTAAATCTCGATTGTGATCATTACATAAACAACAGCAAGGCATTGAGGGAAGCTATGTGTTTTCTAATGGATCCTAATCTTGGCAAGTCTGTTTGTTATGTTCAATTTCCTCAGAGATTTGATGGAATTGATAGGAACGATCGATATGCAAATCGAAACACTGTGTTCTTTGATATCAATTTAAGGGGCTTGGACGGCATCCAAGGTCCAGTTTACGTCGGAACGGGATGTGTTTTCAATCGAACTGCCTTGTATGGTTACGAGCCACCTGTCAAGTCTAAGCATAAGAAACGAGGACTATTCTCTTTTGGTGGGAAAAAGAGTTCGAAATCAAGTCGGAAGGGCTCTGACGGTAAAAATTCGAGCACGCATGCCGACCCCACCGTCCCAATATTCAATCTAGAGGATATCGAAGAAGGAGTTGAAGGTTCTGGGTTTGACGATGAGAAGTCACTGCTTATGTCACAGATGAGCCTGGAGAAGAGGTTTGGTCAATCGGCCGTTTTTGTCGCTTCGACATTGATGGAGAATGGTGGGGTTCCACAGTCCGCCATTGCTGAATCTCTCCTCAAAGAAGCTATTCACGTCATTAGTTGTGGATATGAAGACAAGACAGAGTGGGGAACTGAGATAGGATGGATCTATGGCTCTGTTACAGAGGATATTCTAACGGGTTTTAAGATGCATGCTCGTGGATGGAGATCGATCTACTGCATGCCAAAGCTTGCGGCATTTAAAGGATCAGCTCCGATAAATCTTTCCGACCGTCTAAATCAAGTGCTACGATGGGCTTTAGGTTCAGTTGAAATTCTTTTCAGTCGTCACTGTCCTATATGGTATGGCTATGGAGGAAGGCTCAAATGGCTTGAGAGATTTGCTTACATTAATACCACCATTTACCCAATAACATCCATCCCTCTTCTTGCCTACTGCACGTTGCCGGCCATATGTCTCCTCACTGGCCAGTTCATCATTCCACAGATTAGTAACGTTGCCAGTATCTGGTTCATTTCTCTCTTTCTTTCCATCTTCGCCACCGGAATATTGGAAATGAGATGGAGCGGCGTTGGTATCGACGAATGGTGGAGAAACGAACAATTCTGGGTCATCGGTGGTGTGTCTGCCCATCTCTTCGCCGTTTTCCAAGGCCTGCTCAAAGTCCTCGCCGGAATCGACACAAATTTCACTGTCACCTCCAAAGCTTCCGACGAAGAGGGCGATTTTGCAGAGCTCTACATGTTCAAATGGACAACTCTCCTCATCCCTCCGACAACTCTACTCATCTTCAACTTAGTCGGAGTAGTCGCGGGAATCTCTTATGCCGTTAACAGTGGTTACCAATCATGGGGTCCTCTTTTTGGGAAGCTGTTTTTTGCTTTCTGGGTGATCATCCATCTTTATCCATTCCTTAAAGGTCTGATGGGGAGTCAGAATCGAACACCCACTATTGTTGTAGTCTGGTCTATTCTCCTTGCTTCCATTTTCTCGTTGTTGTGGGTTCGAATTGATCCTTTCACCACCCAAGTTACCGGTCCTGATGTTCAACAATGTGGCCTGCTCCCAAACGGGGATTTTGAGGTTTCACCCAACCCAGCAAACCTCAAAAAAACAGTGATTATAGGTAGACACTCGCTGCCCAAATGGGAGATCAACGGCTTGGTCGAGTACGTGTCAGGTGGGCCACAGCCACGTGGATATTTCCTAGCCGTTCCTCGCGGGGTCCATGCGGTGAGGCTGGGAAATGAGGCTTCCATTTCTCAGAGTGTGAGAGTGGAGAAAGGTTCAGTCTATGCCGTCACATTTGGAGCCACTAGGACTTGCGCGCAAGATGAGGTGATAAGGATATCAGTGGGCGGCCACTCGGCTGATCTGCCTATTCAGACCTTGTATAGCAGCGATGGAGGCGATACTTATGGTTGGGCTTTTAGGGCCATTGATGGAGTTGTTAAGCTCACTTTTCATAACATTGGAGTTCAGGAGGATCCTACTTGTGGACCCCTTTTGGATGCTGTTGCCATCAAACAGATCTTGCCTCTTGGGTACGCTAAAGGAAACCTTGTTAAAAATGGAGGGTTTGAAACAGGTCCTCATACTTTCAAAAACTTCTCAACGGGAGTTCTTCTTCCTCCTAAAAAACAAGACCTGATTTCTCCACTTCCAGGATGGATAATAGAATCCCTCAAACCAATTAAATTCATCGACAGAAAATACTTCTTCGTCCCCAGTGGAAACTATGCTGTCGAACTCGTTGCAGGAAGAGAAAGCGCCATTGCCCAGGTCATAAACACACTTCCCAACAAGTTTTACAACCTCAGTTTCACAATTGGCGATGCAAACAACAACTGCCATGGCGCCATGGAAATCCAAGCTTTTGCAGGCGTGGAAACTTTCAAGCTTCCTTACGTTTCTACAGGAAAAGGTGGCTCAAAAACTGGGAGTTTCAAGTTCAAAGCAACTTCGGCTCAAACAAAGATAACATTTTTCAGTCCGTACTATCACACAAAGCTCAAAGACTTCGGCCATTTGTGTGGTCCTGTATTGGATAATGTTGGGGTTTTTCCATTGCCTTAG 4407 45.65 MAHSHQHAPSIFEVMSGHSPVYNGEYPAFSTPGDAPTPKPVVGSCRPESQFSSTIHNSRRHFLSEHISWLDIFDFFLVLFWMSFFPLQAKASKQIGGRQVCQICSDSVGKTVDGEPFVACNVCNFPVCRPCYEYERKDGNKSCPQCKTKYKWLKGSPLLNGEEGDDSDVNGGANAPNYNSSERDMKYKLPERTLSWDTNYDKEGAFNHIPLLTTGRSVSGDLSAASPERLSMASPESLSRTNYRVMDPSREAGSNGLGGVAWKERIDGWKMKQEKSHPPMSSHAPSEGRGGADFDASTDIVMDDSLLNDEARQPLSRKVSVPSSRINPYRMVIVLRLAILSIFLHYRLTNPVPNAYALWLISVICEIWFAFSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARIWVPFCKKYNIEPRAPEWYFSKKIDYLKDKVQPSFAKDRRVMKREYEEFKIRINVLVAKAQKIPDEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPVKSKHKKRGLFSFGGKKSSKSSRKGSDGKNSSTHADPTVPIFNLEDIEEGVEGSGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAIAESLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLAAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYINTTIYPITSIPLLAYCTLPAICLLTGQFIIPQISNVASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEEGDFAELYMFKWTTLLIPPTTLLIFNLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGSQNRTPTIVVVWSILLASIFSLLWVRIDPFTTQVTGPDVQQCGLLPNGDFEVSPNPANLKKTVIIGRHSLPKWEINGLVEYVSGGPQPRGYFLAVPRGVHAVRLGNEASISQSVRVEKGSVYAVTFGATRTCAQDEVIRISVGGHSADLPIQTLYSSDGGDTYGWAFRAIDGVVKLTFHNIGVQEDPTCGPLLDAVAIKQILPLGYAKGNLVKNGGFETGPHTFKNFSTGVLLPPKKQDLISPLPGWIIESLKPIKFIDRKYFFVPSGNYAVELVAGRESAIAQVINTLPNKFYNLSFTIGDANNNCHGAMEIQAFAGVETFKLPYVSTGKGGSKTGSFKFKATSAQTKITFFSPYYHTKLKDFGHLCGPVLDNVGVFPLP 1468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24105551 24115794 - BLOR04599 Blo12g00580 67841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00580 1468 MobiDBLite consensus disorder prediction 704 740 - -
Blo12g00580 1468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 175 IPR013083 -
Blo12g00580 1468 SUPERFAMILY RING/U-box 96 167 - -
Blo12g00580 1468 Gene3D - 1293 1447 - -
Blo12g00580 1468 SUPERFAMILY Nucleotide-diphospho-sugar transferases 423 929 IPR029044 -
Blo12g00580 1468 PANTHER CELLULOSE SYNTHASE 92 1131 - -
Blo12g00580 1468 ProSiteProfiles Zinc finger RING-type profile. 101 147 IPR001841 -
Blo12g00580 1468 MobiDBLite consensus disorder prediction 272 294 - -
Blo12g00580 1468 Pfam Cellulose synthase 409 1127 IPR005150 GO:0016020|GO:0016760|GO:0030244
Blo12g00580 1468 MobiDBLite consensus disorder prediction 161 184 - -
Blo12g00580 1468 Pfam Protein of unknown function (DUF642) 1297 1463 IPR006946 -
Blo12g00580 1468 Pfam Protein of unknown function (DUF642) 1130 1286 IPR006946 -
Blo12g00580 1468 CDD mRING-HC-C4C4_CesA_plant 99 149 - -
Blo12g00580 1468 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 526 700 IPR029044 -
Blo12g00580 1468 Pfam Zinc-binding RING-finger 98 167 IPR027934 -
Blo12g00580 1468 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 92 1131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00152 Blo-Chr2:1331598 Blo12g00580 Blo-Chr12:24105551 1.50E-131 dispersed
Blo05g00462 Blo-Chr5:6861799 Blo12g00580 Blo-Chr12:24105551 8.68E-150 dispersed
Blo06g00601 Blo-Chr6:28735117 Blo12g00580 Blo-Chr12:24105551 0 dispersed
Blo12g00580 Blo-Chr12:24105551 Blo16g00915 Blo-Chr16:37045354 0 dispersed
Blo18g00036 Blo-Chr18:240944 Blo12g00580 Blo-Chr12:24105551 9.06E-117 dispersed
Blo12g00580 Blo-Chr12:24105551 Blo12g01081 Blo-Chr12:28512601 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00580 K10999 - csv:101211779 1905.95