Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00588 ATGGCTGACCCCTACTCAAATTTCTTTACAGGTCTCTTCAAGCTCAACACAGTCCACCATAACCAACCACCTTCTCCAAACCCTCCGCCGCACCCTGTTTTCTCCCACAACTTTTTCAACCAGAGCCACCCTTTCCATCACCAAACCCCCCCGCCTTCTCCGCCTCTCCGGCAAGCCCTTCCCCTCCTTAGCCTCACGCCCCTCAACCAGCAACAACAAGAAGATCAATCTCACCATTCCTGCTCCACCGCCATGGAAGTGGATCAGAAAAGGTTAAAACAGAAAGAGGAAGAAGAAGAAGAAGACGATGACGTGGCTTCTGTAACTGTTGCCCTCCATATAGGGTTACCTAGCCCTAGTTCAGCTGAACTTGCTTCTGTTCTCTCTGCTTCTTCATCAGAAACCACTGATCTTAAAGATCATGGAGATGTGGATGATTTAGGGTACCCTATGAACAGATTAAACAAGGGTCAGTATTGGATCCCCACTCCTTCTCAGATCCTCATTGGTCCAACACAGTTCTCTTGCCCTGTTTGCTGTAAAAGCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAGTATAGAAGAGGACCAGAATCACTGAGAGGAACTCAACCAACGGGAATGCTAAGGCTTCCTTGCTACTGCTGCGCAACTGGTTGCAGAAACAACATAGACCATCCAAGGGCTAAGGCCCTCAAAGATTTTAGAACCCTCCAAACACATTACAAAAGAAAGCACGGAATCAAGCCTTTCATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGATTGGAGAACTCATGAGAAAAACTGTGGAAAGCTTTGGTATTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGCAAGGAGCATGGAGCTTATGGAGTTGATGGGTTTGATGAAGATGATGAACCTGCGTCTGAGGTTGAACAAGATAATGATGAATCTTTGCAGTAA 1011 45.8 MADPYSNFFTGLFKLNTVHHNQPPSPNPPPHPVFSHNFFNQSHPFHHQTPPPSPPLRQALPLLSLTPLNQQQQEDQSHHSCSTAMEVDQKRLKQKEEEEEEDDDVASVTVALHIGLPSPSSAELASVLSASSSETTDLKDHGDVDDLGYPMNRLNKGQYWIPTPSQILIGPTQFSCPVCCKSFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKALKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHGAYGVDGFDEDDEPASEVEQDNDESLQ 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24185750 24187786 + BLOR04607 Blo12g00588 67849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00588 336 MobiDBLite consensus disorder prediction 19 106 - -
Blo12g00588 336 Gene3D Classic Zinc Finger 235 312 - -
Blo12g00588 336 MobiDBLite consensus disorder prediction 63 83 - -
Blo12g00588 336 Gene3D Classic Zinc Finger 173 196 - -
Blo12g00588 336 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Blo12g00588 336 MobiDBLite consensus disorder prediction 310 336 - -
Blo12g00588 336 SUPERFAMILY beta-beta-alpha zinc fingers 174 278 IPR036236 -
Blo12g00588 336 PANTHER ZINC FINGER PROTEIN WIP2 1 333 IPR043584 GO:0003700|GO:0010468
Blo12g00588 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Blo12g00588 336 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 333 - -
Blo12g00588 336 MobiDBLite consensus disorder prediction 317 336 - -
Blo12g00588 336 SMART c2h2final6 174 196 IPR013087 -
Blo12g00588 336 SMART c2h2final6 258 278 IPR013087 -
Blo12g00588 336 SMART c2h2final6 220 253 IPR013087 -
Blo12g00588 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 278 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00042 Blo-Chr8:355084 Blo12g00588 Blo-Chr12:24185750 5.47E-102 dispersed
Blo12g00588 Blo-Chr12:24185750 Blo16g01053 Blo-Chr16:39048920 2.02E-97 dispersed
Blo11g00133 Blo-Chr11:1026571 Blo12g00588 Blo-Chr12:24185750 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13021 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00588 - - jre:108986074 488.804