Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00594 ATGGAGCCAACTGCAGGATTTATCTCTGGATTCAATTCCATTGGTCCTGTACCTGAAGAATCCGGACTCGAACTTCACCAGTTTCGCGATGAGATTCATAGACTGATGTATTTCCCTCAAGAAAATTCTAGCTCATTCACTGCACTTCTGGAACTTCCTGCGATGCAAGCCATGAACCTTCTCCATTCACCCGACTCTGTCAGAGTTCCAACGACGGCGAAACTCCCGCCCCTTTCTCTCCATAATTCAGTTAGTAACAGTCACAGATTTCACTTCCAACCATTTGACGACCATTTGACCTTCCCGACTGACAGATTGACTGTTGAACGAGCAGCCAAGCTCCCGGCCTTCGCCGGAGAAAGTTTGATGGAAAAGCCGAGGTCGCTGCCGTCGAACATTCGCGCGAATTTGGAGAACGTAAAGAACGAGCTCTTCATGGAGCCTGAGGAATCAGAAGCGTTAATCTCTGATCCAACGGTGGAAAACTCCAACCAGAGATCAGATAAGAGGAAGAACCGAGAGAAGAAGGGTAAAGGATTAACGAAGAAATGCAAAAACGAAAGCTCTGAAGACTCAGAGAAGCTTCCCTATGTTCATGTCCGAGCTCGTCGCGGTCAAGCTACAGACAGCCATAGCTTGGCAGAGCGAGCGAGGAGAGAGAAGATAAACGCCCGAATGAAGCTCCTTCAAGATCTGGTCCCTGGTTGCAGCAAGATATCAGGAACGGCTCTAGTTCTCGATGAAATTATCAACCATGTTCAGTCACTGCAACGTCAAGTGGAGTTTTTGTCAATGAGACTTGCCTCAGTCAATCCAAGCATTGATTTCAATCTAGATACAATTTTGGGTGCAGAGAGCGAGTATACAACGGGTGGTAACTTTTCAAGCATGCCAACGGAATTGACGTGGGCTGATGTCCTTGTCGGTGGAAATAGGCAACACCGACGGCGAGAGCAGCGACAAGAATGGCAAATTGATGGACTTAACCAGCCCGGTTGGGAGAGAGGGGAAGAAAATCAAAATTTCATCCCTCCAGAGCACTCATTTTTGACCTACGACTCCTCTGCACATTCAGGTACACAATCCAATCCAAGTTTTTATCAAGTGGTGATTTGA 1116 47.22 MEPTAGFISGFNSIGPVPEESGLELHQFRDEIHRLMYFPQENSSSFTALLELPAMQAMNLLHSPDSVRVPTTAKLPPLSLHNSVSNSHRFHFQPFDDHLTFPTDRLTVERAAKLPAFAGESLMEKPRSLPSNIRANLENVKNELFMEPEESEALISDPTVENSNQRSDKRKNREKKGKGLTKKCKNESSEDSEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQDLVPGCSKISGTALVLDEIINHVQSLQRQVEFLSMRLASVNPSIDFNLDTILGAESEYTTGGNFSSMPTELTWADVLVGGNRQHRRREQRQEWQIDGLNQPGWERGEENQNFIPPEHSFLTYDSSAHSGTQSNPSFYQVVI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24232549 24236057 - BLOR04613 Blo12g00594 67855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00594 371 Coils Coil 246 266 - -
Blo12g00594 371 Pfam Helix-loop-helix DNA-binding domain 210 257 IPR011598 GO:0046983
Blo12g00594 371 PANTHER TRANSCRIPTION FACTOR BHLH60 21 360 - -
Blo12g00594 371 MobiDBLite consensus disorder prediction 180 195 - -
Blo12g00594 371 Gene3D - 203 275 IPR036638 GO:0046983
Blo12g00594 371 CDD bHLH_AtBPE_like 196 281 - -
Blo12g00594 371 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 360 IPR024097 GO:0006355
Blo12g00594 371 SMART finulus 212 262 IPR011598 GO:0046983
Blo12g00594 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 256 IPR011598 GO:0046983
Blo12g00594 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 275 IPR036638 GO:0046983
Blo12g00594 371 MobiDBLite consensus disorder prediction 150 195 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo09g00420 Blo12g00594 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00594 Blo-Chr12:24232549 Blo13g00550 Blo-Chr13:27394887 2.53E-44 dispersed
Blo12g00594 Blo-Chr12:24232549 Blo09g00420 Blo-Chr9:15172382 6.59E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13022 PF00010 HLH 1.90E-05 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00594 - - csv:101205014 370.933