Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00610 ATGTTTTCGTGGCTAGGAAAGATAGTTTCATCATGTTGGAAACCGGTAAGAAAGTATGCCCGTATGAGCAAGGATGATTTTGAGGATTCGTCTTTGGAAGATTCTCTCTTATGGTGCAGAGACCTAGATAAGCATTTCCATGGCGAACTCTCATTCGCTGTTGTTCAAGCTAATGAAATTATCGAAGATCATAGCCAGGTTGAGATAGGCAGAGAAGCAATTTTCGTGGGTGTGTACGATGGCCATGGCGGCCCCGACGCCTCTCGGTATATTCGTGACCACCTTTTCCTCCATTTTATGAGACTTGCTCAAGAAAAAAACGGAACTGTCTCTGAAGATGTCCTTAGAAATGCCTTTGCCGCAACTGAAGATGGATTTCTTACTCTAGTACGTAGATCATGGGGAATAAAACCATTAATTGCAGCCATTGGATCTTGCTGTCTGGCTGGAGTTATCTGGAGGGGAATGTTATATACTGCTAATCTTGGTGATTCAAGAGCTGTGATCGGTTGTTTAGGAAAGTCAAAAAAGATTGTTGCTGAGCAATTAACTAGAGATCATAATGCAAGTGTGGAAGAGATTAGACAGGAACTCAGGTCGTTGCATTCCGATGATTCGCATATTGTCGTTATGAAGCATGGAGTGTGGCGAATTAAAGGCATCATTCAGTTGCCTGTTTTTTTAATGCTGATGTTATCATACGCTCTTCTATGTTCGGCATACATTTTATCTTTCCCACCAAAATTTTCTGTATATTTTAAACATATCTTATTTGTTGATAGAAATGTTCTATTCTTGAGAGAAGAATATGGCTTTAATGAAAAAAAAGTTATGTTTGGTTTTTTTGGTGCGAATAAATTTTGGTGTGACGGTGTCTTATTTGTGTTTCTGCAAAGGCTTTTGCTAATTGTGTCCAGATCCATAGGCGACGCCTACTTAAAGAGACCAGAATTCTCTCTCGATCCTTCCTTTCCTCGATTCCACCTCCAAGAACCTCTCCGCCGCCCTGTCCTAACTGCTGACCCATCCTTAAACACAAGACTTTTGCGACAAAATGACAAGTTTATAATATTTGCATCGGATGGGCTATGGGAGCACTTGACTAACCAGGAGGCTGTCAATATTGTCTATAATAATCCACGAGCAGGAATTGCGAAAAGACTTGTGAAAACGGCTCTGAATGAAGCTGCTAGGAAGAGAGAGATGAGATACGATGATCTGAAGAAGGTTGAAAAGGGAATCAGGAGATTCTTTCACGATGACATCACTGTGGTTGTCATCTTTCTAGACCACGACTCGCCGGAGAAGATGTCTTCACCGGAGTTATCAATACAAGGATTCGTTGACGTTGTCGGACCATCAAATTTCAACATTCTTCAGGGGATTGCTGATGATGAAACGTCTTGA 1407 41.29 MFSWLGKIVSSCWKPVRKYARMSKDDFEDSSLEDSLLWCRDLDKHFHGELSFAVVQANEIIEDHSQVEIGREAIFVGVYDGHGGPDASRYIRDHLFLHFMRLAQEKNGTVSEDVLRNAFAATEDGFLTLVRRSWGIKPLIAAIGSCCLAGVIWRGMLYTANLGDSRAVIGCLGKSKKIVAEQLTRDHNASVEEIRQELRSLHSDDSHIVVMKHGVWRIKGIIQLPVFLMLMLSYALLCSAYILSFPPKFSVYFKHILFVDRNVLFLREEYGFNEKKVMFGFFGANKFWCDGVLFVFLQRLLLIVSRSIGDAYLKRPEFSLDPSFPRFHLQEPLRRPVLTADPSLNTRLLRQNDKFIIFASDGLWEHLTNQEAVNIVYNNPRAGIAKRLVKTALNEAARKREMRYDDLKKVEKGIRRFFHDDITVVVIFLDHDSPEKMSSPELSIQGFVDVVGPSNFNILQGIADDETS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24398189 24400653 + BLOR04629 Blo12g00610 67871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00610 468 PANTHER ALPHABET, ISOFORM E-RELATED 303 448 - -
Blo12g00610 468 Gene3D - 40 438 IPR036457 -
Blo12g00610 468 SUPERFAMILY PP2C-like 56 430 IPR036457 -
Blo12g00610 468 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 7 224 - -
Blo12g00610 468 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Blo12g00610 468 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 303 448 - -
Blo12g00610 468 ProSiteProfiles PPM-type phosphatase domain profile. 49 429 IPR001932 -
Blo12g00610 468 CDD PP2Cc 56 429 IPR001932 -
Blo12g00610 468 SMART PP2C_4 41 427 IPR001932 -
Blo12g00610 468 PANTHER ALPHABET, ISOFORM E-RELATED 7 224 - -
Blo12g00610 468 Pfam Protein phosphatase 2C 73 398 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00610 Blo-Chr12:24398189 Blo13g00497 Blo-Chr13:26208463 5.02E-49 dispersed
Blo12g00610 Blo-Chr12:24398189 Blo13g00743 Blo-Chr13:30209293 7.02E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00610 K01102 - jre:109011952 370.548