Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00623 ATGAGGACCTCCGATCAGTGTGCTAATCCACTAGTGATGAAGACATTAAGATGGCACAGAGTAGGTTTATACGCCAAGCAGAAGCACAATGCAGCTACGTTGGGACTAGTGCCAGCTGTGAGAGAGGTGGCATGGCAAGCAGACCAACGGTTTTGCATCCGACACCTGTATGCCAATTTTCAAAAACAATTTAAAGGCAGGTTGTTGAAGGATGCAATGTGGGCTGCATCAAGAGCCACAACAGTGAGGCAATTTGAGAAAGAGATGACCAAGTTATTTGTCCTTGACCCGGCGGCCCATGAATATCTACGTGGAATAGAGGTGACCTGCTGGGCCAAACATGCTTTCTCTTCCATCCCAAAGTGCGACATAAGCCTCAACAACCTCAGCGAGTCCTTCAATGCCTGCATCCTACCAACCCGGGACAAACCAATTCTAAGTGAGGCAGCCATTGGAGGAAAGCAGGAGAAAAAGATGGGAGCAGCCGCAGCGGATGGAAGAAACCGAAGAGCTCTTGGAGATATTGGAAATCTCGTAACAGTTCGAGGAATCGATGCAAAGCCCAATCGCCCCATCACAAGAAGGTTCTGCGCCCAATTACTTGCTAATGCTCAAGCTGCTGCGGTCGCTGAAAACAACAAGAAACAGTTGGTGGTTGATGTTAATAACGATGGGGTCGGAGCTGGTAAAAGGGCGGGAGGAGTGGCTCCAAAACCAACTCAGAAGAAACAACTAAAGCCAGTGGAAGTGATCGAGATAAGTTCAGATTCAGATTCATCGTCTAAGAAGAAACAACAGAAACCTATACGCTCTCTTACCTCTGTTCTTACAGCAAGAAGCAAGGCTGCTTGTGGGGTGACAAACAAACCCAAGGAAGAGATTTGCGATATTGATTCAGCTGATGCAGGAAATGAGTTGGCAGAAGTAGAATATATTGATGATTTGTACAAGTTCTACAAGCTTGTTGAGCATGAAAGCAGGCCTCATGATTATGTGGATTCACAGCCTGAGATAAATGTTCAAATGAGATCTATTCTGGTGGATTGGCTGGTTGATGTTCATAACAGATTTGAACTTTGCCCTGAAACATTCTACCTCACGATCAACATAATCGACCGATTTCTGGCAGCCAAGAAGGTGATGAGAAAAGAGCTGCAGTTGGTGGGTATAAGTGCAATGCTGATAGCCTCAAAATACGAAGAAATCTGGGCTCCTTTGGTTGACGACTTTGTCGCTCTTTCAGACAGAGCTTACTCCCATGATCAGATCTTGAAGATGGAGAAAAAAATTCTGGGAGAGCTTGAATGGACATTGACAGTGCCTACGCCTTACGTGTTTCTTGTTCGGTTCATCAAGGCCTCTAAAGATGTGGATTTAGAAATGGAGAATATGGTTTACTTTTTAGCTGAGCTGGGAATGATGCATTATGCGGCTGTGATAATGTACTCCCCATCGATGATTGCTGCCTCGGCAGTCTACGCTGCTCGATGTACTCTGAACAAGAACACTGCTTGGAATGAAACTCTGAAGTTTCATTCTGGCTTCTCGGAATCACAGCTCGTTGATTGTGCGAAACTGTTGGTGAGCTTCCACGAAATGGCGGGTAAGAGCCGGCTGCAGGTTGTGTGTAAAAAGTACTCGAAGTCGGAGAGAGGTGGCGTGGCTCTGCTTCAGCCGGCCAAGAAATTGGGGCCGGGCGGGGATGGGCTGTGTGTGCTTTTGGGCCTGCCTCTGACTGCATTGCTTCAGGTTAATATTTGGTTCGGCAACTCGAGAAACTCTAGGAATGTTGTTGGCAAATTACTCTCAACGATCAGCATGGAATCGCGGCCTAAGAAATTGAGGTCAAAGCGTCGGCAGGCAACGGTGGAGGCCGTTGAACCCGTTCAAACTACGGAAGTGGAAGATGTCTAA 1914 46.87 MRTSDQCANPLVMKTLRWHRVGLYAKQKHNAATLGLVPAVREVAWQADQRFCIRHLYANFQKQFKGRLLKDAMWAASRATTVRQFEKEMTKLFVLDPAAHEYLRGIEVTCWAKHAFSSIPKCDISLNNLSESFNACILPTRDKPILSEAAIGGKQEKKMGAAAADGRNRRALGDIGNLVTVRGIDAKPNRPITRRFCAQLLANAQAAAVAENNKKQLVVDVNNDGVGAGKRAGGVAPKPTQKKQLKPVEVIEISSDSDSSSKKKQQKPIRSLTSVLTARSKAACGVTNKPKEEICDIDSADAGNELAEVEYIDDLYKFYKLVEHESRPHDYVDSQPEINVQMRSILVDWLVDVHNRFELCPETFYLTINIIDRFLAAKKVMRKELQLVGISAMLIASKYEEIWAPLVDDFVALSDRAYSHDQILKMEKKILGELEWTLTVPTPYVFLVRFIKASKDVDLEMENMVYFLAELGMMHYAAVIMYSPSMIAASAVYAARCTLNKNTAWNETLKFHSGFSESQLVDCAKLLVSFHEMAGKSRLQVVCKKYSKSERGGVALLQPAKKLGPGGDGLCVLLGLPLTALLQVNIWFGNSRNSRNVVGKLLSTISMESRPKKLRSKRRQATVEAVEPVQTTEVEDV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24470175 24477301 + BLOR04642 Blo12g00623 67884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00623 637 PANTHER CYCLINS 156 580 IPR039361 -
Blo12g00623 637 Pfam Cyclin, C-terminal domain 441 559 IPR004367 -
Blo12g00623 637 ProSitePatterns Cyclins signature. 343 374 IPR006671 -
Blo12g00623 637 SUPERFAMILY Cyclin-like 440 561 IPR036915 -
Blo12g00623 637 Gene3D - 314 555 - -
Blo12g00623 637 Pfam Cyclin, N-terminal domain 314 438 IPR006671 -
Blo12g00623 637 SMART Cyclin_C_2 441 560 IPR004367 -
Blo12g00623 637 SUPERFAMILY Cyclin-like 304 438 IPR036915 -
Blo12g00623 637 CDD CYCLIN 439 528 IPR013763 -
Blo12g00623 637 MobiDBLite consensus disorder prediction 250 270 - -
Blo12g00623 637 CDD CYCLIN 342 431 IPR013763 -
Blo12g00623 637 Gene3D - 328 439 - -
Blo12g00623 637 SMART cyclin_7 445 529 IPR013763 -
Blo12g00623 637 SMART cyclin_7 348 432 IPR013763 -
Blo12g00623 637 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 156 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00138 Blo-Chr8:1455470 Blo12g00623 Blo-Chr12:24470175 2.25E-129 dispersed
Blo12g00623 Blo-Chr12:24470175 Blo14g00303 Blo-Chr14:3100923 2.96E-131 dispersed
Blo11g00117 Blo-Chr11:879193 Blo12g00623 Blo-Chr12:24470175 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00623 K21777 - csv:101217210 540.036