Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00624 ATGAGGGAGGACGACTCTAATTGGTTCTCTAGGTGGGAGGAGGAGCTTCCATCTCCTGAGGAATTAATGCCTCTATCGCAAACCCTAATCACCCCTGATCTTGCTCTCGCTTTTGAAATCCGAAATCCCTCCAACTCTTCCCCCCAACAAGGCGCTCTTCCTCCTCCTTTCAGTCATTTAGCTTCCTCCGCTGCTGCTGGTGGCTGTGGTGGAGCCACCATCCAACCCAACTCATCTGAGTTTGCGGATTCAGCCGATTTGGGTTCAGGAGCTGCTGGTGACGAACCGGCAAGAACTCTCAAGCGGCCGCGGCTGGTTTGGACACCCCAGCTCCACAAGCGATTCGTAGACGCGGTGGCACATTTGGGGATCAAGAATGCCGTGCCAAAGACTATAATGCAGCTGATGAGTGTTGATGGGTTGACTAGGGAGAACGTGGCTAGCCATTTGCAGAAGTACCGACTATATCTAAAACGAATGCAGGGATTATCCAGCGGTAGCAGCGGAGGAGCCGCTGGAGTGGGCGCCGGAGGTGTTGATCCTGCAACCGATCATTTGTTTGCAAGCTCTCCTGTACCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCTGATCATTTCTTGCCTTTTGTGCCGGTGACAACTCTGCAGCAACACCACCATCACCAGCAGCAGATTGCTGCGGCGGCAGCAGCTACTGCTGTCCATCCTCAGCTACAGCCTCAGTATCACCGACAGGTCTGCCATTTTGGGTCAACTCCGATTGTGCAATTCGAGCATCCGTTTTTATCGAGGCAGACACAGCCAGTTCACAGGGTGGGTACGCCATTGCATAATTCAATACTGAATCATGTTGAGGACTTGGAATCGGCTAATGCTACGGGAGGAAGGAAGGTTATTACTCTGTTTCCAACTGGGGATGATTAA 933 52.3 MREDDSNWFSRWEEELPSPEELMPLSQTLITPDLALAFEIRNPSNSSPQQGALPPPFSHLASSAAAGGCGGATIQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSSGGAAGVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTTLQQHHHHQQQIAAAAAATAVHPQLQPQYHRQVCHFGSTPIVQFEHPFLSRQTQPVHRVGTPLHNSILNHVEDLESANATGGRKVITLFPTGDD 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24483144 24484076 + BLOR04643 Blo12g00624 67885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00624 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Blo12g00624 310 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 310 - -
Blo12g00624 310 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Blo12g00624 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Blo12g00624 310 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 310 IPR044841 GO:0003700|GO:0006355
Blo12g00624 310 Gene3D - 99 161 - -
Blo12g00624 310 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00624 Blo-Chr12:24483144 Blo13g01068 Blo-Chr13:32873275 4.91E-47 dispersed
Blo12g00624 Blo-Chr12:24483144 Blo01g00060 Blo-Chr1:747686 1.25E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13028 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00624 - - csv:101216969 424.091