Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00624 ATGAGGGAGGACGACTCTAATTGGTTCTCTAGGTGGGAGGAGGAGCTTCCATCTCCTGAGGAATTAATGCCTCTATCGCAAACCCTAATCACCCCTGATCTTGCTCTCGCTTTTGAAATCCGAAATCCCTCCAACTCTTCCCCCCAACAAGGCGCTCTTCCTCCTCCTTTCAGTCATTTAGCTTCCTCCGCTGCTGCTGGTGGCTGTGGTGGAGCCACCATCCAACCCAACTCATCTGAGTTTGCGGATTCAGCCGATTTGGGTTCAGGAGCTGCTGGTGACGAACCGGCAAGAACTCTCAAGCGGCCGCGGCTGGTTTGGACACCCCAGCTCCACAAGCGATTCGTAGACGCGGTGGCACATTTGGGGATCAAGAATGCCGTGCCAAAGACTATAATGCAGCTGATGAGTGTTGATGGGTTGACTAGGGAGAACGTGGCTAGCCATTTGCAGAAGTACCGACTATATCTAAAACGAATGCAGGGATTATCCAGCGGTAGCAGCGGAGGAGCCGCTGGAGTGGGCGCCGGAGGTGTTGATCCTGCAACCGATCATTTGTTTGCAAGCTCTCCTGTACCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCTGATCATTTCTTGCCTTTTGTGCCGGTGACAACTCTGCAGCAACACCACCATCACCAGCAGCAGATTGCTGCGGCGGCAGCAGCTACTGCTGTCCATCCTCAGCTACAGCCTCAGTATCACCGACAGGTCTGCCATTTTGGGTCAACTCCGATTGTGCAATTCGAGCATCCGTTTTTATCGAGGCAGACACAGCCAGTTCACAGGGTGGGTACGCCATTGCATAATTCAATACTGAATCATGTTGAGGACTTGGAATCGGCTAATGCTACGGGAGGAAGGAAGGTTATTACTCTGTTTCCAACTGGGGATGATTAA 933 52.3 MREDDSNWFSRWEEELPSPEELMPLSQTLITPDLALAFEIRNPSNSSPQQGALPPPFSHLASSAAAGGCGGATIQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSSGGAAGVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTTLQQHHHHQQQIAAAAAATAVHPQLQPQYHRQVCHFGSTPIVQFEHPFLSRQTQPVHRVGTPLHNSILNHVEDLESANATGGRKVITLFPTGDD 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24483144 24484076 + BLOR04643 Blo12g00624 67885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00624 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Blo12g00624 310 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 310 - -
Blo12g00624 310 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Blo12g00624 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Blo12g00624 310 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 310 IPR044841 GO:0003700|GO:0006355
Blo12g00624 310 Gene3D - 99 161 - -
Blo12g00624 310 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00624 - - - csv:101216969 424.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00624 Blo-Chr12:24483144 Blo13g01068 Blo-Chr13:32873275 4.91E-47 dispersed
Blo12g00624 Blo-Chr12:24483144 Blo01g00060 Blo-Chr1:747686 1.25E-23 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13028 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00624 Blo_Chr12 FPKM 0.282498 0.049803 0.168278 0.071236 0.0 0.029548 0.076706 0.0 0.0 0.0