Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00677 ATGCTCAAAGAATCGGTTGTCCTCGTGTGCTACGCTAGCGTGACGGAAATGGGAAGGGTAAAAGCTGGCTTTAGCTTCTGCCTCCGCGGAAAAAAACCATCAGACTTTACCATCCAAGTCGGAAATCTGGGAGGAGGGCATTTGAAACGAGACGAGGACTGGCTGACGATGAAAATCGAGAAGAAGCGAGATGAGCGAGTCATAAGAACTATGTGGATCAATCCGAAAGGCGGGTCACAGAAAGTCGGAAACTTGAGAATAGAGAAAGGAAGAGGATGGTTTTACGAAGAGAGTGAGGGAGCGGAGCATTCGTCTTCGCCAATGGCGTCCATAACTGGATGGTACGGACCCTTGATCGACCTCTCCAAAGCCTCTTTTCACATTGGAGATTTCGTTCAACTCCTCGTCTTCATTCACCAATCCACTCCTACCAAGTTTAAGTCGTCGAAAGGTGGGGAGGTTATGAGGACAGACATTAAGGTTGGTGACGATACAAGGTCGTTTTTTCATGTTTCCATTTGGCAGAAAAAGATGGGATCCGCAGCATTTCCTGGCCATTTCGTACTGTTGCAGAATGTGAAAATTGCAAAATTTGGAGATGTGGTTGAAGCCACAACTGTCCACTGCTCCTCCTTATCATCACTACTCAGCCCTTGCGAATGGCTTGGTGACAAGGGAGTAGAAGGCATGATAAGCAATTGTAAAATTGGAGAAGTGGCAAAAGAAAAGTTAAGGAAAGTAGTGGAATGGGTGAGGAAAACTAGATCCACCATTGGCAACACTCTATGCCATGGCAGCAAAAAAATGTTTCCTCTCTCAAGAAACAAGAAGAACTCAAAGGATTGCTTTTCGCTTTCAGCATTGTTTCGCCTGACAGATTCCTGTGTTGCGACCTTCCATGCATCCATTGGTGAAATGTTTTTACCATTTTCCTGGTGCGAGTCTGACGAATGTGGAAAGGAGAAGATGTTCATCAGCAGGAGACTATACCAAAACGAAGATTTCAGTTTAGCCGCAGATCTCATCTGCACTGGCTGTGAGCTGTGTGGTTCCTCTTTGAAACAGGAAAATGGGGCTGTGATTCAGCACAACACTATGCCACTTTATTGCTCTAAAAGCTCAAGCCACCTTCACGTAATAACCTCCATATACAGACCCTTTATGTTATACGTGTGGGATGAGACAGAATTTGTGCCGCTCCTCGTTAGAAACAAAGCTGCAGAGATTTTGTTTGGAAACATCAAAGCTGAAAGAGTTTGCTCATCCCTCGCAAAGCAGAAACGGGATCAAGATTCCAAATCAACGGCTGTTGCTCAATGTCTAAGAACTAGAGGGGACGGAAGCATTGCTTCTTGTTCCCTGGGGGCTGGAATGGAATCGATGGAGGATCGATATGATAAAGAGAAAAGCCTCAATTTCTTTCAAATATGGTTTATTCTTCTAAAAATGTTGCTACAGCAGGAACAGAACAGTCCTTTGATGTTTGAAATCACTGTAAATCCCAGCTTGGAGAAGGAAAATGGCAGGTTTGAGATGATTTCTGTGTCGGCCCCATGCCTTCAAACCACTTAG 1572 44.78 MLKESVVLVCYASVTEMGRVKAGFSFCLRGKKPSDFTIQVGNLGGGHLKRDEDWLTMKIEKKRDERVIRTMWINPKGGSQKVGNLRIEKGRGWFYEESEGAEHSSSPMASITGWYGPLIDLSKASFHIGDFVQLLVFIHQSTPTKFKSSKGGEVMRTDIKVGDDTRSFFHVSIWQKKMGSAAFPGHFVLLQNVKIAKFGDVVEATTVHCSSLSSLLSPCEWLGDKGVEGMISNCKIGEVAKEKLRKVVEWVRKTRSTIGNTLCHGSKKMFPLSRNKKNSKDCFSLSALFRLTDSCVATFHASIGEMFLPFSWCESDECGKEKMFISRRLYQNEDFSLAADLICTGCELCGSSLKQENGAVIQHNTMPLYCSKSSSHLHVITSIYRPFMLYVWDETEFVPLLVRNKAAEILFGNIKAERVCSSLAKQKRDQDSKSTAVAQCLRTRGDGSIASCSLGAGMESMEDRYDKEKSLNFFQIWFILLKMLLQQEQNSPLMFEITVNPSLEKENGRFEMISVSAPCLQTT 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25047748 25050940 - BLOR04696 Blo12g00677 67938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00677 523 PANTHER OS04G0450500 PROTEIN 108 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00677 - - - mnt:21403072 442.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g296 . Blo12g00677 . . . . . . . . . Cma09g00809 . . . Cpe06g00643 . . . . . . . . . . . . . . . . . . . Lsi04g02376 Csa04g01817 . . . . . . . . . . . . Cmo09g00802 . . . Car09g00724 . . Bhi09g02649 . . . . . . Cla11g00771 Cam11g0806 Cec11g0787 Cco11g0793 Clacu11g1052 Cmu11g0913 Cre11g1251 . . Chy07g00665 Cme07g00873
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012326 1 3 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00677 Blo_Chr12 FPKM 4.290648 4.530873 2.533387 2.142506 14.32795 11.412202 16.071602 1.269626 1.598842 1.829411