Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00679 ATGAGAAAAATGAACGTTGATAGAGTTCAAGCATTGGTTTCCAATGGGGTGTCAGAGCTCCCTCCCCAGTTCATCCGGCCGCACCACGAACGGCCAGAGAACAGCAAGGCGATGGAGGGCCTGGCGGTGCCACTCATCTCTCTATCTCAGCCGCATGACGCCCTAGTAGAAGAAATATCCAGAGCCAGCAGCGAATGGGGATTCTTTGTGCTGACGGATCACGGGATATCACCAAAGTTGATCAGACGGCTGCAAGAGGTGGGGGAGGAGTTCTTCAGGCTGCCGCAGGAGGAGAAGGAGGTGTACGCAAACGATCCTACCAACGGAAGATTCGAAGGGTACGGAACGAAGATGACGAAGAACGCCGACGACAAGCTCGAATGGTTGGATTACTATTTCCATCACGTGGCTCCTCCTTCTGAGGTCAACTTTAATTTTTGGACCAAAAACCCACCTTCGTACAGGGAAGTGACAGAAGAATACAGCAAGGAAATAGAAAGAGTGGCTGACAAAGTGTTGGATCTACTTTCAGAAGGTTTAGGCTTGGAAGAGAATACATTAAGGAGGCATCTGGGAGGAGGGGCTCGACTCCTTCTCGAGATGAAAATAAACATGTACCCTCCATGCCCTAGTCCGGAGCTCGCCCTCGGAGTCGAGCCCCACACCGACATGTCAGCTCTCACTCTTCTTCTCCCAAACGATGTTCCCGGCCTTCAACTCTGGAAACAAAACCACTGGGTGGCGGTTCCTCACCACCCAGATGCTCTCGTTGTCAACGTTGGCGATCAAATTCAGGTGCTCAGCAATGGGGAGTACAAGAGCGTGCTTCACAGGAGTTTAGTGAACAAGGAGCGGACGCGCATGTCATGGGCTGTGTTCTGTGCTCCTCCGCACCAGGCCGTGATAGGGCCTCTTCCTCAGCTTATAAACGACCAAAACCCGCCTAAATACTCCACCAAGACGTATGCCGAGTACCGCCACCGCAAGTTCAATAATCTTGCACAATAA 1008 51.88 MRKMNVDRVQALVSNGVSELPPQFIRPHHERPENSKAMEGLAVPLISLSQPHDALVEEISRASSEWGFFVLTDHGISPKLIRRLQEVGEEFFRLPQEEKEVYANDPTNGRFEGYGTKMTKNADDKLEWLDYYFHHVAPPSEVNFNFWTKNPPSYREVTEEYSKEIERVADKVLDLLSEGLGLEENTLRRHLGGGARLLLEMKINMYPPCPSPELALGVEPHTDMSALTLLLPNDVPGLQLWKQNHWVAVPHHPDALVVNVGDQIQVLSNGEYKSVLHRSLVNKERTRMSWAVFCAPPHQAVIGPLPQLINDQNPPKYSTKTYAEYRHRKFNNLAQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25055345 25056493 - BLOR04698 Blo12g00679 67940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00679 335 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 6 335 - -
Blo12g00679 335 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 296 IPR005123 -
Blo12g00679 335 SUPERFAMILY Clavaminate synthase-like 6 332 - -
Blo12g00679 335 Pfam non-haem dioxygenase in morphine synthesis N-terminal 43 141 IPR026992 -
Blo12g00679 335 Gene3D - 3 334 IPR027443 -
Blo12g00679 335 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE-LIKE 6 335 - -
Blo12g00679 335 Pfam 2OG-Fe(II) oxygenase superfamily 203 296 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00679 K05278 FLS; flavonol synthase [EC:1.14.20.6] - twl:120010136 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00187 Blo-Chr3:4511293 Blo12g00679 Blo-Chr12:25055345 7.13E-100 dispersed
Blo12g00389 Blo-Chr12:20596944 Blo12g00679 Blo-Chr12:25055345 4.60E-80 dispersed
Blo18g00535 Blo-Chr18:7316947 Blo12g00679 Blo-Chr12:25055345 0 transposed
Blo11g00063 Blo-Chr11:485296 Blo12g00679 Blo-Chr12:25055345 1.58E-112 wgd
Blo12g00679 Blo-Chr12:25055345 Blo18g00190 Blo-Chr18:1832564 1.46E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g306 . Blo12g00679 . . Bpe02g00077 . . Bma01g02641 . Cmo15g00711 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0457 . . . . . . . . . . . . . . . . . . Car15g00641 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018109 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00679 Blo_Chr12 FPKM 37.544197 38.084297 3.431632 3.319287 18.624685 12.577422 17.595486 10.528193 11.20688 9.798752