Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00688 ATGAGCTCGCAGAACCGGGCTCGCGGGCCGGGGGTCCCCCAGCCCTCTGCCCGGGATCGCCGAAGCTCGCCAGACGAAGACGAAGAGGAGCTGGCTCGCTCGTCGCTGGATCTCGCGTCGAAGGACGAAGCCCGGGCTCGTCCTTCGTTCGTTCGTCGACGCGTCGACGAGCTTCGTTCGCTGAAGCAGCTCTCGTCGCTGGATCTCGCGTCGAAGGACGAAGCTCGTCGAGGCTGGAGTCTCCCGAAGGCCAGCGCTGGAACTCGCGTCGAAGGACGACGAAGCTCGTCGAGGCGTCGTCTTCTTCGTTCGCTGCTGGAGCTCGACGAGACGTCGAGGCGTCCTTCTGCGTCGAAGGACGAAGCTTGTCGAGGCGTCGTCTTCTTCGTCGAAGGACGAACTCGTCGACTGGCTCGTCGTCTGCTTCGTCGAAGGACGAAGCTCGTCGAGGCGTCGTCTTCTTCGTCGAAGGACGAACTCGTCGACTGGCTCGTCGTCTGCTTCGTCGAAGGACGAAGCTCGTCGACGGGCTCGTCGACGTCTTCGTTGTCGTCTGTGATGAAGCTGTTCTGTGATAGGCTGAGTACCTTCAGGCCAGCAATGGAGCCTACACCAGAAGGGATTTCTCCAGATAGAGAAGGGTTCGATTCAAGAGAAAGAAGATCCAACGCAGCAACTGAGACACGCATGGATTTGGCTGAATTGTGGGCGATCTTTGGCCCAGGCGTCGCCGGGGCTATCTTCGGTGCTGGCTGGTGGTTTTGGGTTGACGCTGTCGTCTGCAGCTCTGTTTCCGTTTCCTTTGTTCACTATCTCCCTGGGATTTTTGCCTCTTTTGCCGCCCTCATGTTCAATTGCGTTCGGAAAGAGGACATCGACTACTCTCCTTATGATGATGGCGAATGGAGGTTGAAGCTGTGGCTCTTCTTTGCATATGTTGTATCCTTTGTTTCTTTAGCAGCATCAGTTGGACTTTTGATACAGGATTCCCTTGTAAAAACTGGCCCTTCAGTGTGGACAGGAACTGCTGGGGTCTTGCAGTGTGTTTTTGTGTTGAATTTGAAGAACTCAAATTACAAAAACATGGAGTTCTTCTCCTACAAGGCTATGCTCCTCGTGACAATGGCTCTGACGTTCAGCCATCTTCCTCTCATCCGTACTTACCCTATCGGAGTGAACTACGGGCTCAACGGGGACAATCTTCCATCTCCGATCGATGTTATTAATCTCTATAATAAATGTAACATCGAATACGTGAGGATCTTCGAGCCAATAGCTGCTGTACTGGAAGCACTACGGGGACGCCCAAACCTCCTCGTAATGGGAACCAGAAACGAGGACATACAGAGCCTAGCGTCCAGCCAAGACGCAGCCAATGCTTGGATAAACACAAACGTTGCTCCTTATATCAACTCGAACAACTCAGTAAACCTCCGTTTCATCACGGTCGGAAACGAGGTTGTCCCGGGACCCGAAGCTGCCTACGTCGCCCAAGCCATCATAAACTTACAACAAGCGATTGTCAATGCCGGAATTACGTTCGATATAAGGGTCACAACAGTGGTGTCAATGGACGCTTTAGCAGTTTCGTTTCCTCCATCTACCGGCGCGTTCAAAGACGAAGCAGCAGGACCCATGCAAGCCATTATCCAGGCTTTGTCACCTCAGGGACGGTCCATTTTTCTTAACGTCTATCCTTACTTCGCTTACGCCGCCAATGCTCAACAGATTTCGTTAGATTACGCGTTGTTTCAGTCAAAACAAGCGGTGGTCACCGACGGGAGTTTCGAGTACTATAATCTGTTCGATGCGATGGTGGATAGTTTCTACGTAGCTCTGGAGAAAGTGGGAGGGAGCGGTGTGAGGGTGGACGTAGGCGAAACGGGTTGGCCGAGCGCCGGAAATGATCCGTACACTAGCCTGGCTAACGCACGGGCATATAACTTAAATTTTGCGAACCATGCGATGAGCGGAAAAGGAACTCCGAGGAGGCAAAACTTAACCTACGGTAGTTACGCAATCGAAGTGAACTATGGGCTTAACGGTGACAATCTTCCATCTTCAGTTGACGTTATCAATCTCTATAATACATGGAAACCATGTGCAAAGAAGGGAACCAGAATTCGGTTTAACTTTGGGGCGACTGGCCGAGACTATGATCTCAACTGGAAGCGATGTCGTGGTGAGGTGATGGACGACGATGAGTTCAAACTCATCCGTCTAGAAGCTGGTCGCCTTCTGCGCGACTCAGCCAAATCCGTAAGTCGTGATTTTGGGGTCTTGGATGGACTGCCTATCTACGAGCCAGAGGAAGACTTGGCTCGATCTGGTATGCATACTGTAGACCAGACTAGTGAGCCTTGGATTATTGAATTTTGTTTTGGGCTTTGGTCTGGGTGTGTTAGCTACAGATCAAACTAG 2421 51.96 MSSQNRARGPGVPQPSARDRRSSPDEDEEELARSSLDLASKDEARARPSFVRRRVDELRSLKQLSSLDLASKDEARRGWSLPKASAGTRVEGRRSSSRRRLLRSLLELDETSRRPSASKDEACRGVVFFVEGRTRRLARRLLRRRTKLVEASSSSSKDELVDWLVVCFVEGRSSSTGSSTSSLSSVMKLFCDRLSTFRPAMEPTPEGISPDREGFDSRERRSNAATETRMDLAELWAIFGPGVAGAIFGAGWWFWVDAVVCSSVSVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYDDGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSLVKTGPSVWTGTAGVLQCVFVLNLKNSNYKNMEFFSYKAMLLVTMALTFSHLPLIRTYPIGVNYGLNGDNLPSPIDVINLYNKCNIEYVRIFEPIAAVLEALRGRPNLLVMGTRNEDIQSLASSQDAANAWINTNVAPYINSNNSVNLRFITVGNEVVPGPEAAYVAQAIINLQQAIVNAGITFDIRVTTVVSMDALAVSFPPSTGAFKDEAAGPMQAIIQALSPQGRSIFLNVYPYFAYAANAQQISLDYALFQSKQAVVTDGSFEYYNLFDAMVDSFYVALEKVGGSGVRVDVGETGWPSAGNDPYTSLANARAYNLNFANHAMSGKGTPRRQNLTYGSYAIEVNYGLNGDNLPSSVDVINLYNTWKPCAKKGTRIRFNFGATGRDYDLNWKRCRGEVMDDDEFKLIRLEAGRLLRDSAKSVSRDFGVLDGLPIYEPEEDLARSGMHTVDQTSEPWIIEFCFGLWSGCVSYRSN 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25119502 25132715 - BLOR04707 Blo12g00688 67949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00688 806 MobiDBLite consensus disorder prediction 19 43 - -
Blo12g00688 806 Pfam Glycosyl hydrolases family 17 390 667 IPR000490 GO:0004553|GO:0005975
Blo12g00688 806 Gene3D Glycosidases 390 676 - -
Blo12g00688 806 SUPERFAMILY (Trans)glycosidases 390 675 IPR017853 -
Blo12g00688 806 MobiDBLite consensus disorder prediction 1 43 - -
Blo12g00688 806 Pfam Uncharacterised protein family (UPF0220) 239 352 IPR007919 -
Blo12g00688 806 PANTHER GLYCOSYL HYDROLASE SUPERFAMILY PROTEIN 376 667 - -
Blo12g00688 806 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 376 667 IPR044965 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00688 - - - zju:112489356 356.295
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00388 Blo-Chr9:14739990 Blo12g00688 Blo-Chr12:25119502 1.36E-69 dispersed
Blo09g00389 Blo-Chr9:14751022 Blo12g00688 Blo-Chr12:25119502 4.81E-72 dispersed
Blo12g00688 Blo-Chr12:25119502 Blo04g01210 Blo-Chr4:22821342 4.44E-47 dispersed
Blo11g00058 Blo-Chr11:449638 Blo12g00688 Blo-Chr12:25119502 2.94E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g331 . Blo12g00688 . Bda03g00516 Bpe02g00083 . . Bma01g02636 Cmo04g02431 Cmo15g00735 . . . . . . . . . . . . . . . . . . . . . Cone4ag1370 Cone7ag1561 . . . . . . . . Bda11g00748 . . . . . . . . . . Car04g02244 Car15g00661 Cpe01g02019 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005321 3 1 2 2 2 1 2 1 1 1 2 1 2 1 1 2 0 2 2 0 1 1 1 2 0 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00688 Blo_Chr12 FPKM 32.887444 32.807877 35.793644 34.405502 36.093056 35.393673 41.600151 23.651321 22.098276 27.554256