Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00691 ATGGATCAAACTGGCGCTCAGCCTGGTTTTTTCCTGGGGTTTAATTCTCACACAATAACACCGCCGTCTACAAGTTCGATTACTGACGATTCTAACCATATGAGCTCGACGGGTTCAACCACATCTTATTCGGTGCAATTTCTTGACCGAAAGGATGAGAAAAGTTGTTTAGAAAATAAGAATGATCAAAGCGAAGATGAGAATTTTCGCCTTTGGGGACAGCCCTTGCGCGTGAAGAGACAAAGGGATGGTCAATCTTCTATCGCTTCAAACCCTACTAAACGGGTGGCAGATGAATCTGATCTTAATGCGAGGAGAGCTGCTGTTCGGGCATGGGGAAACCAGCCACTTGAGATTGCCGATCCCGAGGTCCATGGAATCATGGAGAAGGAGAGGCGGAGACAAAACGTGGGTATTGAATTAATAGCTTCGGAGAATTTTGTGTGTAAGGCTGTGATGGAAGCATTGGGAAGCCATTTGACAAACAAGTACTCCGAGGGAATGCCCGGAGCTAGATACTACACAGGCAATCAGCACATCGATGAGATTGAGCTGCTATGCTGTGACCGGGCACTTGCAGCTTTTGATCTTGATTCTGAAAAATGGGGTGTGAATGTACAGCCTTATTCTTGCACGTCTGCAAATTTTGCAGTTTATACTGGTCTTTTGCTTCCAAAGGATCGAATTATGGGTCTAGATTCACCTTCAGGTGGGCATATGAGTCATGGATATTATATTCCTGGTGGGAAGAAGGTTTCTGCCTCCTCTATATTCTTCGAGAGCCTTCCATACAAAATAAACCCCCAATCAGGGTATGTTGATTATGATAAACTTGAGGAGAAGGCTGTTGATTTTCGTCCAAAGATACTTATATGCGGTGGGAGTTCATATCCTCGTGAGTGGGATTATGCACGGTTCAGACAGATTGCCGATAAGTGCGGGGCGGTGTTGATGTGTGACATGGCACATATCAGTGGTCTCGTGGCTGCCAAGGAATGCACCAGTCCATTTGACTATTGTGACGTGGTAACCTCCACAACTCACAAAAGTCTCCGAGGTCCAAGGGGAGGCATTATCTTTTATAGGAAGGGCATGAAATCAATGAAGCAAGGAAATCGATATGATTTTGAGGAGAAGATAAACTTTGCTGTTTTTCCATCATTACAAGGGGGCCCTCACGATAATCACATTGCGGCACTTGCCATCGCATTTAAACAAGTGGCTACTCCCGAGTACAAAGCTTACATGCAACAAGTGAAGAAAAATGCTCAGGCTTTGGCGACGGTATTGTTGAGAAGAAAATGCAAATTGGTGACTGGTGGAACTGACAATCACTTAATACTCTGGGATTTGACTGCTTTAGGAATAACAGGCAAGCACTATGAGAAGGTGTGCGAGATGTGCCATATCACTCTTAACAAATGTGCTATATATGGTGATAATGGTACCATTTGCACAGGGGGAGTAAGAATAGGTGCGCCTGCTATGACGACAAGAGGATGTTTGGAGGCTGATTTCGAGACAATTGCTGACTTTCTTCTGAGGGCAGCTCAGATCACAAAAAGTTTGATGCAGAGAGATTTTGGAAAACTACAAAAGGATTTTCTGATTTGTCTTCAAAACAACAAAGATGTTGTGGGCCTTCGAAATCGTGTTGAGGCATTTGCTTCGCAATTTGCCATGCCCGGATTCGACATTTGA 1701 44.39 MDQTGAQPGFFLGFNSHTITPPSTSSITDDSNHMSSTGSTTSYSVQFLDRKDEKSCLENKNDQSEDENFRLWGQPLRVKRQRDGQSSIASNPTKRVADESDLNARRAAVRAWGNQPLEIADPEVHGIMEKERRRQNVGIELIASENFVCKAVMEALGSHLTNKYSEGMPGARYYTGNQHIDEIELLCCDRALAAFDLDSEKWGVNVQPYSCTSANFAVYTGLLLPKDRIMGLDSPSGGHMSHGYYIPGGKKVSASSIFFESLPYKINPQSGYVDYDKLEEKAVDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECTSPFDYCDVVTSTTHKSLRGPRGGIIFYRKGMKSMKQGNRYDFEEKINFAVFPSLQGGPHDNHIAALAIAFKQVATPEYKAYMQQVKKNAQALATVLLRRKCKLVTGGTDNHLILWDLTALGITGKHYEKVCEMCHITLNKCAIYGDNGTICTGGVRIGAPAMTTRGCLEADFETIADFLLRAAQITKSLMQRDFGKLQKDFLICLQNNKDVVGLRNRVEAFASQFAMPGFDI 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25140161 25142559 + BLOR04710 Blo12g00691 67952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00691 566 MobiDBLite consensus disorder prediction 80 101 - -
Blo12g00691 566 SUPERFAMILY PLP-dependent transferases 107 565 IPR015424 -
Blo12g00691 566 MobiDBLite consensus disorder prediction 1 42 - -
Blo12g00691 566 CDD SHMT 121 527 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo12g00691 566 Gene3D Aspartate Aminotransferase, domain 1 121 562 IPR015422 GO:0003824
Blo12g00691 566 Pfam Serine hydroxymethyltransferase 118 512 IPR039429 -
Blo12g00691 566 Gene3D - 146 417 IPR015421 GO:0003824
Blo12g00691 566 Hamap Serine hydroxymethyltransferase [glyA]. 116 563 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo12g00691 566 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 80 566 - -
Blo12g00691 566 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 80 566 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo12g00691 566 MobiDBLite consensus disorder prediction 80 97 - -
Blo12g00691 566 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 341 357 IPR019798 GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00691 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - jre:108984655 892.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00337 Blo-Chr1:4032346 Blo12g00691 Blo-Chr12:25140161 0 dispersed
Blo12g00102 Blo-Chr12:7371193 Blo12g00691 Blo-Chr12:25140161 0 dispersed
Blo12g00691 Blo-Chr12:25140161 Blo16g00318 Blo-Chr16:8160594 1.96E-171 dispersed
Blo03g00301 Blo-Chr3:5885871 Blo12g00691 Blo-Chr12:25140161 0 transposed
Blo11g00054 Blo-Chr11:432975 Blo12g00691 Blo-Chr12:25140161 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g340 . Blo12g00691 . Bda03g00512 Bpe02g00085 Bpe04g00468 . Bma01g02633 . . Cma01g01411 . . . . . . . . . . . . . . . . . . . . Cone4ag1365 Cone7ag1566 . . Lsi04g02356 Csa04g01838 . . . . Bda11g00752 Bda13g01409 . . . . Sed12g1436 Cmo01g01461 . . . . . . Cpe02g00532 Bhi09g02629 Tan01g3975 Cmetu07g0508 . Hepe01g2251 Mch11g0798 . Cla11g01508 Cam11g1567 Cec11g1596 Cco11g1594 Clacu11g1723 Cmu11g1543 Cre11g1958 . . Chy07g00694 Cme07g00907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00691 Blo_Chr12 FPKM 5.335227 6.868176 22.93532 23.640463 15.75039 14.812451 15.758817 1.814658 1.698942 1.570625