Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00693 ATGGGCGGCCAAAACCCATCATATTCATCGCCGGCTTCGCTTTTTTTAGGAAACTTCGTATCAGATAAGACGTTGAACAAGAGAACAGTCGAGGATCTTTGGAAAGACATTCTTCATAACGACCAATCGATTTGTCAGAAATCTGTCCTCGATGATTTTCTCCTTGGAGCCGGAATCGTTAGCGTTGGAAACCAAAATGGTGACATCGATCAACCTCAATGTCTCGTGGAAGATGATTCAATGTCTAAGGCATTAGTAGACACAGAATTCCAATCTCGTGATCAACACTTTTTCGAAACCCAATTTCCGATCCCTTCACTATCGCCTGAGTTTTTTGATTCTCAGTTGGCATCGGGACGAAAGCGAGGTTCTTCGTGTGAACTGACGGAGACGACAACCGATCGGAGGAAGAAGCGGATGATTAAAAACCGAGAATCGGCTGCAAGATCAAGAGCCAGAAAGCAGGCATACACTAATCAGCTGGAGCATCAAGTGTTTCAGTTAAGGGAAATCAATTGCTGGCTAAAGAAACAAAAGGTAAGTTGTAGGAGTAGAAAGATGAAGAACTGTCTGTATATGGCTAATTTCGCTCTAGCGGGATTAACTGTGGCACCTCTTTTTGTAAAGGTGGATCCAAACTTGAATGTTATTTTGACGGCATGTCTCACTGTTTATGTCGGTTGCTATCGATCTGTGAAACCCACTCCACCTGCTGAGACAATGTCTAATGAACATGCTATGCGTTTTCCCTTTGTGGGAAGTGCAATGCTGTTGTCACTTTTCTTACTTTTTAAGTTTCTATCAAAGGACTTGGTTAATGCAGTATTGACATGTTACTTCTTTGTTCTTGGAATTCTTGCTTTATCGGCAACATTGTTACCTGCAATTAGAGGATATCTACCCAAGAATTGGAATGACAATGTTATTACATGGCATTTCCCGTACTTCCGGTCTTTGGATATTGAGTTCACAAGATCTCAGATTGTGGCTGCGATCCCTGGAACCTTTTTCTGTGCATGGTACGCATCAAGGAAGCATTGGCTTGCCAATAATACTTTGGGCCTTTCTTTCTCTATCCAGGGAATTGAAATGCTCTCTCTTGGATCATTTAAGACAGGTGCCATTCTTTTGGCTGGACTTTTTTTGTATGATATTTTCTGGGTTTTCTTTACTCCGGTGATGGTTAGTGTTGCTAAATCGTTTGATGCTCCGATAAAGCTTTTGTTCCCTACTGCAGATTCTCTCCGCCCATTTTCAATGCTTGGACTTGGTGACATTGTTATTCCTGGCATCTTTGTGGCATTGGCCTTGCGATTTGACGTGTCTAGGGGGAAAGAAAGTCAATATTTCAAAAGTGCATTTTTAGGTTACACAGTTGGTTTGATCCTCACAATTGTTGTGATGAACTGGTTTCAAGCAGCCCAGCCTGCCCTTTTATATATTGTGCCGGCTGTAATTGGATTTTTGGCTGCTCACGTAATATGGAATGGTGAAGTCAAACAGTTGTTGGAGTTTGACGAGTCTAAGAATTCGTCTCAAGAAGAAACAGAAAAGGCGGAAGCCGAAAGCGAAACGAGCAAGAATGTTGAAGAATCTGTTAGTAACCGTCAAGTTAAAGTGGGGCCCACAGCCACATTTTTTGCCAATGAGAATGAGGTACGTGGAATTGGAAATGAAGTTGCAATTGTGTTGCATTCTGTCTTAGCAACTCTAAACGAGGAGAATGATGAGAACCTCCGTTCAATATGTCAATCCACTAGTGATGAAGACATTGACATGACTGAGAGGGCTAGTGCCAGCTGTCAGAGAGGTGGCAAGGCAAGCGGACCATCGGTTTTGCATTCGACACCTTCCCGTGCATTCACTTCACGAGGAGATCCTGAGGAATTTTTGTATGCGTGCTATCACTGGGAAACATATATGGCGATGTACTCCCACTTTGTCCGCCCTGTCAATAGACCAATCGAGTGGCCTCTTGTGACGAATTTTGATCCAATCCCGCCATTTAAAAGGCTTCCAGGAAGGCCGCACAAACGTAGAATATGGAATGTGGACGAGGCCCCAAGCCGGACAGTACTGTCTAGAAGACATCTGAACGTCACTTGTGGCCTGTGTGGGGGTGTGGGGCACAATTCCCGCATGTGCGAAGGTGGAGGCGAGTTCAGTGCAGAGGCCGGTAGAGGCGATAGAGGGAGAGGCAGAGCCAGAGCTAGAGGAGGCAGAGGAAGGTCGGAGGGCACATCCATAGTCCTTGAGACAGTCCCCGACAATTTGAATTTGTATATTGGTTCTATACATTTGTTTGTGGAGTGTGCATGGAATTTGATTACAGGTATTGCGAGCAAGCCGCCACGGTTTGTTATGCAAGCCATTGTGGGTTGCTCACAAACCGCCGCGGCTTGCTGA 2406 44.64 MGGQNPSYSSPASLFLGNFVSDKTLNKRTVEDLWKDILHNDQSICQKSVLDDFLLGAGIVSVGNQNGDIDQPQCLVEDDSMSKALVDTEFQSRDQHFFETQFPIPSLSPEFFDSQLASGRKRGSSCELTETTTDRRKKRMIKNRESAARSRARKQAYTNQLEHQVFQLREINCWLKKQKVSCRSRKMKNCLYMANFALAGLTVAPLFVKVDPNLNVILTACLTVYVGCYRSVKPTPPAETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGILALSATLLPAIRGYLPKNWNDNVITWHFPYFRSLDIEFTRSQIVAAIPGTFFCAWYASRKHWLANNTLGLSFSIQGIEMLSLGSFKTGAILLAGLFLYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSLRPFSMLGLGDIVIPGIFVALALRFDVSRGKESQYFKSAFLGYTVGLILTIVVMNWFQAAQPALLYIVPAVIGFLAAHVIWNGEVKQLLEFDESKNSSQEETEKAEAESETSKNVEESVSNRQVKVGPTATFFANENEVRGIGNEVAIVLHSVLATLNEENDENLRSICQSTSDEDIDMTERASASCQRGGKASGPSVLHSTPSRAFTSRGDPEEFLYACYHWETYMAMYSHFVRPVNRPIEWPLVTNFDPIPPFKRLPGRPHKRRIWNVDEAPSRTVLSRRHLNVTCGLCGGVGHNSRMCEGGGEFSAEAGRGDRGRGRARARGGRGRSEGTSIVLETVPDNLNLYIGSIHLFVECAWNLITGIASKPPRFVMQAIVGCSQTAAAC 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25164122 25174586 + BLOR04712 Blo12g00693 67954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00693 801 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 138 153 IPR004827 GO:0003700|GO:0006355
Blo12g00693 801 PANTHER SIGNAL PEPTIDE PEPTIDASE-RELATED 187 530 - -
Blo12g00693 801 MobiDBLite consensus disorder prediction 507 534 - -
Blo12g00693 801 MobiDBLite consensus disorder prediction 722 744 - -
Blo12g00693 801 SMART brlzneu 131 195 IPR004827 GO:0003700|GO:0006355
Blo12g00693 801 MobiDBLite consensus disorder prediction 507 529 - -
Blo12g00693 801 Gene3D - 134 188 - -
Blo12g00693 801 MobiDBLite consensus disorder prediction 601 620 - -
Blo12g00693 801 MobiDBLite consensus disorder prediction 723 741 - -
Blo12g00693 801 Pfam Basic region leucine zipper 134 178 IPR004827 GO:0003700|GO:0006355
Blo12g00693 801 CDD bZIP_plant_BZIP46 135 180 - -
Blo12g00693 801 PANTHER SIGNAL PEPTIDE PEPTIDASE 187 530 IPR007369 GO:0004190|GO:0016021
Blo12g00693 801 Pfam Signal peptide peptidase 237 508 IPR007369 GO:0004190|GO:0016021
Blo12g00693 801 SMART psh_8 237 496 IPR006639 GO:0004190|GO:0016021
Blo12g00693 801 SUPERFAMILY Leucine zipper domain 135 181 IPR046347 GO:0003700|GO:0006355
Blo12g00693 801 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 133 178 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00693 K09595 HM13; minor histocompatibility antigen H13 [EC:3.4.23.-] - pop:7454866 603.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00693 Blo-Chr12:25164122 Blo02g00973 Blo-Chr2:37711807 1.15E-84 dispersed
Blo19g00339 Blo-Chr19:22302653 Blo12g00693 Blo-Chr12:25164122 3.58E-23 dispersed
Blo01g01258 Blo-Chr1:47865954 Blo12g00693 Blo-Chr12:25164122 8.14E-18 transposed
Blo15g00516 Blo-Chr15:9220814 Blo12g00693 Blo-Chr12:25164122 1.57E-67 transposed
Blo11g00050 Blo-Chr11:399551 Blo12g00693 Blo-Chr12:25164122 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g347 . Blo12g00693 . . . Bpe04g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00642 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000335 3 0 67 7 2 1 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 2 3 0 0 1 9 0 101
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13036 PF04258 Peptidase_A22B 1.90E-88 CL0130 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00693 Blo_Chr12 FPKM 8.990296 11.322119 10.192792 8.726199 11.286273 14.84392 13.936852 19.445284 21.033489 21.116549