Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00699 ATGCATGCCCGTTACTTAACCGACGTACACTCCGGCTCCGCTTCGACAACTCATGCTTCGTTCTCACTTCCCTCCTTGATAAATATCGCTCTTCCGTCGCCTTTTGTTCTCCCCTCTCATTTTTCTAAAGCGCGCTTTCTACGAAGCTGGAATTCTCTGCTTGGTTATCGGGAAAGATTTTTCTGGAAGATTTCTTTCTATTTTTCCTTGGCTTTCGCTTGGATTCTTCGTATTTTGAAGGCCATGGAGCGGTTTCAAAACGACGATATTGCATATGCTGTGGACAACTTATACGAGGTGACTGATTTCGATGAAGCTGACCCTTTCGGAGAAGACGCACCAGTGGTGAGCGATTATTGTGATCTGTCAGACTGTGACTTTGATGACGACTTCGATTCTAGCAATTCAAAAACTGATACTTCTGCTTTGGAAGCGAAAAATGGCAAAGACATCCAAGGAATTCCTTGGGAAAGGCTTAATTTTTCCAGAGATGAGTTTCGTGAAACGCGTTTAAAGCAGTATAAGAACTACGAGAATATCTCTCTCTCTCGCTCTCGCGAAGAGCTAGAAAAGGAGTGCCTACAAGTAGAACAGGCGAAGACCTTCTATGACTTTCAGTTAAATACGAGACTTGTCAAACCCACAATTGTGCATTTTCAGTTAAGAAATCTTTTGGGTGCAACCTCAAAGCATGATGTGTACCTAATGCAGAACTATTCCATAATGCACTGGTCCGCTTTGCGTCGAAGTGCTACTGAAGTGCTTAATGTTGCTAGACCTATTATTCCCACTACGAAATTTACAGGAGCAATGTCTCAGTCAGTCACAAGAGTGCAAATTAGCACTATGGCAGTCAAGGAAAATTTAATTGTAGCTGGTGGATTTCAGGGGGAACTTATTTGCAAGTATTTGAACCATCAAGGAGTTGCATTTTGCACAAAAGTAACTACAGATGATAATGCAATAACAAATACAGTTGATATATTTTCTAACGCAAGTGGTGCAAATAGGGTTGTCACTGGGAATAATGATGCTCAAGTTAGGATTTTTGACGCAGAGAAGTTTCTTTGCCTTAGCCGCTTCTCATTTCCTTGGTCTGTTAACAATGCATCTGTTAGCCCGGATGGTAAGTTACTTGCGGCTCTTGGGGACAGCTTGGAGTGCTTGATGGCAGATGCCAACTCTGGAAAAGTCGTTGGAAGTCTCAAAGGACATTGGGACTATTCATTTTCCTCTGCTTGGCATCCAGAAGGACATATTTTGGCTACTGGCAGTCAAGATGCTACCTGCAGATTGTGGGATGTCAGGAATTTGTCCCAATCTCTAGCCGTTCTTAAAGGAAGAATGGGAGCTATAAGAGCCTTAAAGTTTACTTCAGATGGTCGATTTTTGGCAATGGCCGAGCCAGCTGACTTTGTTCATATTTTTGATGCACATGTTGGCTACACTCGAGAGCAAGAAATAGATTTCTTTGGTGAAATTGCCGGCATTTCCTTTAGCCCCGACTCTGAAACACTCTTTATAGGGATCTCGGACCGCACTTACGGCAGCTTAATAGAGCTAAATCGAAGACATTACAACAGGTATTTAGACTCCATCTTCTAG 1605 42.68 MHARYLTDVHSGSASTTHASFSLPSLINIALPSPFVLPSHFSKARFLRSWNSLLGYRERFFWKISFYFSLAFAWILRILKAMERFQNDDIAYAVDNLYEVTDFDEADPFGEDAPVVSDYCDLSDCDFDDDFDSSNSKTDTSALEAKNGKDIQGIPWERLNFSRDEFRETRLKQYKNYENISLSRSREELEKECLQVEQAKTFYDFQLNTRLVKPTIVHFQLRNLLGATSKHDVYLMQNYSIMHWSALRRSATEVLNVARPIIPTTKFTGAMSQSVTRVQISTMAVKENLIVAGGFQGELICKYLNHQGVAFCTKVTTDDNAITNTVDIFSNASGANRVVTGNNDAQVRIFDAEKFLCLSRFSFPWSVNNASVSPDGKLLAALGDSLECLMADANSGKVVGSLKGHWDYSFSSAWHPEGHILATGSQDATCRLWDVRNLSQSLAVLKGRMGAIRALKFTSDGRFLAMAEPADFVHIFDAHVGYTREQEIDFFGEIAGISFSPDSETLFIGISDRTYGSLIELNRRHYNRYLDSIF 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25269562 25273808 + BLOR04718 Blo12g00699 67960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00699 534 PANTHER OS03G0386000 PROTEIN 82 534 - -
Blo12g00699 534 ProSitePatterns Trp-Asp (WD) repeats signature. 421 435 IPR019775 -
Blo12g00699 534 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 437 - -
Blo12g00699 534 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 82 534 - -
Blo12g00699 534 Gene3D - 240 517 IPR015943 GO:0005515
Blo12g00699 534 SUPERFAMILY WD40 repeat-like 273 516 IPR036322 GO:0005515
Blo12g00699 534 Pfam WD domain, G-beta repeat 397 434 IPR001680 GO:0005515
Blo12g00699 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Blo12g00699 534 SMART WD40_4 395 434 IPR001680 GO:0005515
Blo12g00699 534 SMART WD40_4 438 477 IPR001680 GO:0005515
Blo12g00699 534 SMART WD40_4 354 392 IPR001680 GO:0005515
Blo12g00699 534 SMART WD40_4 296 351 IPR001680 GO:0005515
Blo12g00699 534 Coils Coil 179 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00699 - - - qsu:112038073 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00075 Blo-Chr7:1115833 Blo12g00699 Blo-Chr12:25269562 2.78E-64 dispersed
Blo12g00149 Blo-Chr12:10357868 Blo12g00699 Blo-Chr12:25269562 3.85E-167 dispersed
Blo12g00699 Blo-Chr12:25269562 Blo05g00724 Blo-Chr5:25414576 8.89E-14 dispersed
Blo12g00699 Blo-Chr12:25269562 Blo02g00418 Blo-Chr2:5485857 1.79E-169 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00699 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.040252
Blo12g00699 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.040252