Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00702 ATGGCGAATTGCGCTGTGAAGAATGACTCAGGCTGCGGATTCGTGTCGGGGGTCTTCCATCGTCGATGCAAGTGGCCGAAAAAATCCACGGTATACTCACTTCCGACGACTAAGCACTCGGGGGAGAAGAATTATGAAAATTCGCCCAAACCGGCTAGAGTTTCCGCAGCAGAAACGAAGAAGAAAACGATTGTTAATAAGCCTGTTGCTGACCAGCCAAAGCCACTATGCTCTCAACGAAATCATCAACCACGACGTCTTTCCGATGCTGCTACCAGAAGCTCGACATCATCGTCCACCGCTAATTCAACCCAAGCTAAGACGATTCAAAACAAACCTCCGGCTCTAGGCCACTTAGGAAACTTGAGACAGGGTGGAAATGGCAATCTGTGGACGGCCAATACTCCCAAAGCCTCAAATAAAGATATTATCAACTCTCTGCCTAAACTAAGTGGCAGTGGAAACATGGGGAACATTTTTGGTCAATTTCAAGGTCTTCGAAGTAGAATAGACCCTGATGCTTTGAAATGCATGGGAAACGAGGCTTACAATCTGGGTAGATTCGAGGAGGCTTTGAATTTGTATGAGCGAGCTATAGCTTTGGACTCTGAAAATGCCGTCTATCACTGCAACAAGAGCGCCGCTCTGATGAGCTTAGACCGTCTAATGGAGGCCATCGAGGAATGCCGACTGGCCATTCGGATTCACCCTTCTTATTGCAGAGCTCATCATCGATTGGCCACTTTGTGTCTCAGTCTGGGAGAAACAGAGAAAGCGATATATCACTTCAAAGAATCAAGCGACCGTACTGAAGATAAGGACATTGACAAAACACGTGCGCTTCAAAATTCCCTGAGTAGGTGCAGTGAAGCCAGAAAATCAAAAGATTGGAACGGCTTGTTGAAGGAGACCCAGTTAGCGATTTCCGTCGGAGCGAAATCATCTCATAAGGTGTATGCTCTGCAATCCGAGGCCTTACTAAGGCTTCAAAGGCATCAAGAGGCTTATGCAGCCTACCAGACGAGTCGAAATCTGAGAAATGAATTCGCCAAGTTAATCGACGCGGCTGATACATCCTATCCTTTAATGATCGAAGCTCAGGTTTACTTGACAATGGGCAGATTTGAGGAGGCAGTGGCAGCTGCACAACATGCGTTGGAAATCGATCCAATCAACGCGGAGATTGGGGCGGTGACGACGAGGGCCAGGGCAATTTCGTCGGCTCGGTCAAGCGGCAATCTACTGTTCAGAGCGTCGAGATTCTCCGAAGCATGCGTTGCATATAGCGAAGGACTAGAGATGGACCCATATAACTCGGTTTTACTATGCAACAGAGCAACGTGTCGGTCAAAGCTTGGTCAATTCGAGAAGGCTATTGAGGATTGCTCTGTGGCTCTTCGCGTTCAACCTTCCTACAGCAAAGCCAGGGTTCGCAGGGCCAGTTGTAATGCTAAATTGGAGAGGTGGGAAGCTTCGGTTCAGGACTATGAAGTGGTGATGAGGGAGATGCCGGCCAATGAGGAAGTAGGGAGGGCTCTGTTTGAAGTGCAAGTGCAGCTGAAGAAAGAGCGAGGGGAAGATGTTGAGGGCATGGAATTTGGATCCAAATTGGTGTCTGTTTCAAGCACTGATCGTTTCAGACACTTCATTACATCTCCCGGGATGTCAGTGGTGCTTTTCTGCAAAAAACAGACTCATAAAAAGGAGTTGCGAGTCATAGAGAAAGTCTGCCATAGATTCCCATCAGTAAACTTCCTCCAGGTGGAGACAGCGGATCATCCTTTCTTAGCAAAATCAGAGGGAATAAGCTCAATCCCAGCCTTCAAAATATACAAAAATGGATCCAGCGTCCAAGAATTTCTGGCTAGCAACCCAGAATCATTAGAAAGCTGTATCAGATTGTACAGTAGTTGA 1914 47.34 MANCAVKNDSGCGFVSGVFHRRCKWPKKSTVYSLPTTKHSGEKNYENSPKPARVSAAETKKKTIVNKPVADQPKPLCSQRNHQPRRLSDAATRSSTSSSTANSTQAKTIQNKPPALGHLGNLRQGGNGNLWTANTPKASNKDIINSLPKLSGSGNMGNIFGQFQGLRSRIDPDALKCMGNEAYNLGRFEEALNLYERAIALDSENAVYHCNKSAALMSLDRLMEAIEECRLAIRIHPSYCRAHHRLATLCLSLGETEKAIYHFKESSDRTEDKDIDKTRALQNSLSRCSEARKSKDWNGLLKETQLAISVGAKSSHKVYALQSEALLRLQRHQEAYAAYQTSRNLRNEFAKLIDAADTSYPLMIEAQVYLTMGRFEEAVAAAQHALEIDPINAEIGAVTTRARAISSARSSGNLLFRASRFSEACVAYSEGLEMDPYNSVLLCNRATCRSKLGQFEKAIEDCSVALRVQPSYSKARVRRASCNAKLERWEASVQDYEVVMREMPANEEVGRALFEVQVQLKKERGEDVEGMEFGSKLVSVSSTDRFRHFITSPGMSVVLFCKKQTHKKELRVIEKVCHRFPSVNFLQVETADHPFLAKSEGISSIPAFKIYKNGSSVQEFLASNPESLESCIRLYSS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25289387 25291693 - BLOR04721 Blo12g00702 67963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00702 637 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 105 IPR044534 -
Blo12g00702 637 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 91 634 IPR044534 -
Blo12g00702 637 Pfam Tetratricopeptide repeat 428 460 - -
Blo12g00702 637 SUPERFAMILY Thioredoxin-like 528 629 IPR036249 -
Blo12g00702 637 ProSiteProfiles TPR repeat profile. 359 392 IPR019734 GO:0005515
Blo12g00702 637 MobiDBLite consensus disorder prediction 32 138 - -
Blo12g00702 637 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 91 634 - -
Blo12g00702 637 Pfam TPR repeat 179 214 - -
Blo12g00702 637 SUPERFAMILY TPR-like 172 392 IPR011990 GO:0005515
Blo12g00702 637 Pfam Tetratricopeptide repeat 366 391 IPR019734 GO:0005515
Blo12g00702 637 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 4 105 - -
Blo12g00702 637 Pfam Thioredoxin 572 632 IPR013766 -
Blo12g00702 637 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Blo12g00702 637 Gene3D Glutaredoxin 530 636 - -
Blo12g00702 637 SMART tpr_5 172 205 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 439 472 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 316 349 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 240 273 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 405 438 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 473 506 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 206 239 IPR019734 GO:0005515
Blo12g00702 637 SMART tpr_5 359 392 IPR019734 GO:0005515
Blo12g00702 637 MobiDBLite consensus disorder prediction 76 111 - -
Blo12g00702 637 CDD TRX_family 546 627 - -
Blo12g00702 637 Gene3D Tetratricopeptide repeat domain 171 525 IPR011990 GO:0005515
Blo12g00702 637 SUPERFAMILY TPR-like 411 522 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00702 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 668.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01056 Blo-Chr2:40787373 Blo12g00702 Blo-Chr12:25289387 2.28E-09 dispersed
Blo03g00661 Blo-Chr3:28092262 Blo12g00702 Blo-Chr12:25289387 1.43E-127 dispersed
Blo12g00702 Blo-Chr12:25289387 Blo16g00028 Blo-Chr16:1635777 2.11E-131 dispersed
Blo11g00039 Blo-Chr11:330677 Blo12g00702 Blo-Chr12:25289387 0 wgd
Blo12g00702 Blo-Chr12:25289387 Blo05g00769 Blo-Chr5:27876480 2.57E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00702 Blo_Chr12 FPKM 11.111388 13.78146 39.628239 35.605579 7.528576 9.579894 8.369901 35.392216 35.635658 35.115349