Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00713 ATGATCTTCTTGTTCACAGGGACCATAAAAGGTTTGACAACTAGCCAACTTGAGGAGATTGGCTGCCAAATCATACTTGGAAACACATATCATTTGGCACTTCGTCCTACATCAGAGCTTATTGATGAGTTGGGAGGTCTCCACAAGTTCATGAACTGGCCAAGAGCACTGCTTACTGACTCTGGTGGCTTTCAAATGGTATCGTTACTACATTTAGCAGACATCACTGAAAAAGGTGTAACATTTCAGTCGCCAGTTGATGGAAAGCCAATGCTTCTAACACCAGAGGAGTCGATACAAATCCAAAACAGAATTGGAGCCGATATTATTATGGCTCTTGATGATGTAGTTAGAACCACTATTACTGGTCCAAGAGTCGAGGAAGCCATGTATCGCACTCTTCGATGGATAGATAGATGTATAGCTGCTCATGAGAGACCTAATGAGCAGAATTTATTTGGTATTGTACAAGGTGGTTTAGATCCTGTATTAAGGGACATATGTGTTAGAGGCCTGGTAGAACGAAAATTACCTGGCTATGCTATTGGTGGTCTTTCAGGAGGTGAAGACAAAGATTCATTTTGGCGTGTTGTTGCTCAGTGCACGGCTTCATTGCCTGAGGATAAACCTCGATATGTTATGGGTGTTGGTTATCCTCTAGATATTGTGGTTTGCAGTGCCTTGGGTGCTGACATGTATGACTGTGTTTATCCTACTCGCACTGCACGGTTCGGCACAGCTCTTGTTCCAGAGGGAGTGCTTAAACTAAAGCATAAGGCCATGGCTGATGATACTCGTCCTATTGATCCTTCATGCACTTGTTTGGTTTGTAAGAACTATACGAGAGCCTATATTCATTGCCTCGTTACCAAAGATGCCATGGGATCTCAGCTTCTATCGTATCATAATTTGCACTACATGTTGAAGCTTAGCAGAGATCTGCATTTCTCAATCGTCCAAGGAAAATTTCCAGAGTTCGTGTGCAGCTTTCTGCAAAAAATGTTCCCAGAAGGTGATGTTCCTGAATGGGTCTGTAATGCCATGGAAGTTGCTGGAATTGATATTTCTTCTTGCTGTTCCCCGTTCAAGACTAGTTTTTGGAGAGTATTGCTCAGTTTTTGGAATGCACAGGGGGGAACAGCAGGGAACCGAGAACCGTCGGTTCTGGACCCAGAACCGTGGTCTGTTCCGAGTTTGGTTCTGGTGCCCATCCGTTCCGCGTTTGGTACCGACTTCTCGGAACCGAGAACCGACTATTCAGTTTCGGACTGTCTGGAATCGGAACCAAACTCGAATTGCCCACCCCTATGGGAAGCCATATTGGAAGCAATGGGGTTCTCCTTCCTCTCTACCGTCCCTTCTTTTACCCCTTCTCTTCCTTTCTCGCCCCTTACTTCTCCTACTTCTGCTGTTTCTACCTCCAGATACCACTCTCGAAATGTTGGAATTCGTTGTGGTAAAGGCGATTATGATGACGATGGCCACTTTCGTCGCAGAGACATTCTTAAATGCGTTGGTGGCACCGTCGCCATGGGCAATCCAGATCTTCTTCCGTCTATTCTAACTTTGGCATTAAATGACGCAATGACTTATGATAAGGCTACAAAATCTGGTGGCCCAAATGGATCCATCAGGCTCAGCTCAGAGATAAGCAGATCAGAAAACAAAGGACTTTCTGCTGCTTTGAGTTTATTAGAGGAAGCAAAAAAGGAAATAGATGCATATTCTAAGGGTGGACCCATTTCCTTTGCGGATCTCATCCAGTATGCAGCTCAAGGTGGTATTAAGTCTACTTTTCTAGCTGCTGCCATTCGCAAATGTGGGGGGAAGGAAGACAAAGGAAGGTTATTATACACTGCATATGGTTCAAATGGGCAGTGGGGATTATTTGATAAGCAATTTGGAAGATCAGATGCACAAGAGCCAGATCCAGAGGGGAGGGTTCCCCTCTGGGAGAAAGCTAGCGTTGAGGAAATGAAGAACAAATTCTCTTCTGTCGGCTTGGGTCCCAGGCAGCTAGCTGTTCTATCTGCTTTCTTGGGACCTGATCAGACAACAACAGAAGCGCTATTGGCTACTGACCCCGATGTTTCTCCGTGGGTTCAAAAGTATATACGCAGCCGAGAAACAGTGTCTCAGACTGACTATGAGGTTGATCTGATTACAACTCTGACAAAACTAAGCACCTTCGGCCAGCAAATCAATTATGAGGCTTATACGTATCCTGTCCAAAAGACGATGGTTCGGACGAAGCCCACTGCCCGCAAATCGACCGGAGGAAAAGCTCCGAGGAAACGGCTTTCTTTTAAGGCTTCGCTCAATGCTACCAAGGTTTCGAAGCCGCAGAGGCGTCCGCATGGCTTAGTAACATCCTCCGGCGCTGCCGGGCAACCAGGTCCGCAACAGGCAGAGATGGATCACATCGACGAGATTCACAGCTGCCTCAGGCATGCCGTAAACGCTGAGGAAGCTGAAGAACAAATTGGGCTTAGCGATGAGGCGCTCACAAAGAAACATATCTTAGACAGTGCAAAGCTGTTCTTTGGTGCAACTCTGGTCCGAGCTCGGCTTAAGAGGATGAGAACCGAAATTGAGGAAAAAACGAAGAAGGTGCAGCAGCTTGAGGCTCAGCTGGTTTCAGAGAGAACAAGGAACGAAGGGAGGATGAGGTCGGCGGAGAGAGATTTCAAAGCAAAGCTTCATGCAGCTCTAGAGGATTATAAACAGAGGGTGGATTCGTTAGAGGCGTCTCACCAGGAGAAGCAAGATAAAGCAGTGGAGAGCTTCAAATCTTCCATCGAATTGGAGAGGTTACAGTTCCAACAGTTTTGTTCGGGTTATATGCTTTGTCGTGATGAAATCAGGAAGAAAAACCCCCATTGGGACTTGGCATTCCTTGCAGAGGATACAGTCCCCAATGATGGGAAGATGGGAGAAGCTTCTTAA 2946 46.2 MIFLFTGTIKGLTTSQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRALLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVRTTITGPRVEEAMYRTLRWIDRCIAAHERPNEQNLFGIVQGGLDPVLRDICVRGLVERKLPGYAIGGLSGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHKAMADDTRPIDPSCTCLVCKNYTRAYIHCLVTKDAMGSQLLSYHNLHYMLKLSRDLHFSIVQGKFPEFVCSFLQKMFPEGDVPEWVCNAMEVAGIDISSCCSPFKTSFWRVLLSFWNAQGGTAGNREPSVLDPEPWSVPSLVLVPIRSAFGTDFSEPRTDYSVSDCLESEPNSNCPPLWEAILEAMGFSFLSTVPSFTPSLPFSPLTSPTSAVSTSRYHSRNVGIRCGKGDYDDDGHFRRRDILKCVGGTVAMGNPDLLPSILTLALNDAMTYDKATKSGGPNGSIRLSSEISRSENKGLSAALSLLEEAKKEIDAYSKGGPISFADLIQYAAQGGIKSTFLAAAIRKCGGKEDKGRLLYTAYGSNGQWGLFDKQFGRSDAQEPDPEGRVPLWEKASVEEMKNKFSSVGLGPRQLAVLSAFLGPDQTTTEALLATDPDVSPWVQKYIRSRETVSQTDYEVDLITTLTKLSTFGQQINYEAYTYPVQKTMVRTKPTARKSTGGKAPRKRLSFKASLNATKVSKPQRRPHGLVTSSGAAGQPGPQQAEMDHIDEIHSCLRHAVNAEEAEEQIGLSDEALTKKHILDSAKLFFGATLVRARLKRMRTEIEEKTKKVQQLEAQLVSERTRNEGRMRSAERDFKAKLHAALEDYKQRVDSLEASHQEKQDKAVESFKSSIELERLQFQQFCSGYMLCRDEIRKKNPHWDLAFLAEDTVPNDGKMGEAS 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25448503 25465537 - BLOR04732 Blo12g00713 67974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00713 981 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 6 358 - -
Blo12g00713 981 Coils Coil 897 924 - -
Blo12g00713 981 SUPERFAMILY tRNA-guanine transglycosylase 6 333 IPR036511 GO:0006400|GO:0016763
Blo12g00713 981 Pfam Queuine tRNA-ribosyltransferase 6 334 IPR002616 GO:0006400|GO:0016763
Blo12g00713 981 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 7 334 IPR004803 GO:0008479|GO:0101030
Blo12g00713 981 Gene3D - 653 718 - -
Blo12g00713 981 Gene3D - 499 652 - -
Blo12g00713 981 MobiDBLite consensus disorder prediction 775 803 - -
Blo12g00713 981 Coils Coil 850 884 - -
Blo12g00713 981 CDD plant_peroxidase_like 513 749 - -
Blo12g00713 981 SUPERFAMILY Heme-dependent peroxidases 508 731 IPR010255 GO:0004601|GO:0006979|GO:0020037
Blo12g00713 981 Gene3D - 1 336 IPR036511 GO:0006400|GO:0016763
Blo12g00713 981 Hamap Queuine tRNA-ribosyltransferase [tgt]. 1 333 IPR004803 GO:0008479|GO:0101030
Blo12g00713 981 PRINTS Plant ascorbate peroxidase signature 517 532 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo12g00713 981 PRINTS Plant ascorbate peroxidase signature 535 545 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo12g00713 981 PRINTS Plant ascorbate peroxidase signature 677 702 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo12g00713 981 PRINTS Plant ascorbate peroxidase signature 549 573 IPR002207 GO:0004601|GO:0006979|GO:0020037
Blo12g00713 981 Pfam Peroxidase 513 684 IPR002016 GO:0004601|GO:0006979|GO:0020037
Blo12g00713 981 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 6 334 IPR002616 GO:0006400|GO:0016763
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00713 K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64] - csin:114287940 707.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00713 Blo-Chr12:25448503 Blo06g00285 Blo-Chr6:16013506 8.30E-13 dispersed
Blo07g01022 Blo-Chr7:29971345 Blo12g00713 Blo-Chr12:25448503 1.85E-64 transposed
Blo12g00879 Blo-Chr12:26990420 Blo12g00713 Blo-Chr12:25448503 2.28E-09 transposed
Blo12g00713 Blo-Chr12:25448503 Blo18g00236 Blo-Chr18:2302260 1.40E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g450 . Blo12g00713 . Bda03g00481 . Bpe04g00435 Bma04g00448 . . . . Cma09g00573 . . . Cpe06g00437 . . . . . . . . . . . . . . . Cone4ag1321 . . . Lsi04g02253 Csa03g04464 Chy04g00237 . . . . Bda01g01336 . . . . Sed14g0067 . Cmo09g00560 . . . Car09g00502 . . Bhi09g02464 Tan01g3814 Cmetu04g2961 . Hepe01g2146 Mch11g0684 . Cla11g01400 Cam11g1456 . . Clacu11g1617 Cmu11g1434 . . . . Cme04g00265
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005915 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 6 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00713 Blo_Chr12 FPKM 62.979965 62.237274 46.871796 47.914898 40.395729 47.666172 42.408474 18.808874 19.55443 19.214697