Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00721 ATGGAATTCGACGAGGAGCACAAAGATCAAGAGAAAGAAATGGAGGAAATTCCGATGGAGACGCTGAGTTTCGACTCTCTAGGTTTTGCGAGGTCGAGAATCGGAAACACCGCTGGAGAAGGAGCGTCGGCAATGAGAAACATTGTCTCGAGCACTAGATACAGGGAATGCCTGAAGAACCACGCTGTAAACATTGGTGGCCACGCAGTGGACGGTTGCGGGGAATTCATCGCCGGAGGAGAAGAGGGTACTCTTGACGGACTGAAGTGTGCTGCCTGTAACTGCCATCGGAATTTCCACAGAAAAGAAACGGATTCAGATCAACTCTCATTTCAACAGTCCCACCATTACCAACAGCAGTATCACCAGCCACAGTTTTCTACCTTCTATCGAGGGCCTCTACAACCATCTGGGTATTTTCACCAGGCCTACGCGACCAAGCATCGGCCGTTGGCTTTGCCGTCCCCGTCCAGCGGCAGATCCTTCAGCAGAAACGAAAAAGATACGTCGAATCCAAGCAGTAGCGGAGGCGATAGAAGTGGGTTGAAGAAGAGATACAGGTCCAAGTTTAGTCAGGAGCAGAAAGGGAAGATGTTAGATTTTGCAGGGAGGCTTGGGGGAATTGAAACCCTTAAGCTTGCTGCTGCAAAATCGTGTGAGGAGCTCTCTCCAAACAACCCGGTGCTCGGTTCTTGCTTCACCGCAATTCCTCACCAAATCTCCTCCTCTCACCGTTTCTTGCTCGATCTTGGAGAGGAGGTTCTAGCTAGCTCTTCCAGTATTTCTTTAGAGGAATGTCAGTGGCATGAGGAGCTAGAAGACCGAGCAAAAGCCAAGAAGGAGTGA 846 50.12 MEFDEEHKDQEKEMEEIPMETLSFDSLGFARSRIGNTAGEGASAMRNIVSSTRYRECLKNHAVNIGGHAVDGCGEFIAGGEEGTLDGLKCAACNCHRNFHRKETDSDQLSFQQSHHYQQQYHQPQFSTFYRGPLQPSGYFHQAYATKHRPLALPSPSSGRSFSRNEKDTSNPSSSGGDRSGLKKRYRSKFSQEQKGKMLDFAGRLGGIETLKLAAAKSCEELSPNNPVLGSCFTAIPHQISSSHRFLLDLGEEVLASSSSISLEECQWHEELEDRAKAKKE 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25540007 25543583 - BLOR04740 Blo12g00721 67982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00721 281 MobiDBLite consensus disorder prediction 156 178 - -
Blo12g00721 281 Gene3D - 167 223 - -
Blo12g00721 281 MobiDBLite consensus disorder prediction 150 191 - -
Blo12g00721 281 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Blo12g00721 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Blo12g00721 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 36 206 - -
Blo12g00721 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 206 - -
Blo12g00721 281 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00721 - - - zju:107410162 221.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g01050 Blo-Chr11:28686025 Blo12g00721 Blo-Chr12:25540007 1.49E-06 dispersed
Blo12g00721 Blo-Chr12:25540007 Blo04g00916 Blo-Chr4:10741087 4.61E-34 dispersed
Blo12g00721 Blo-Chr12:25540007 Blo05g00749 Blo-Chr5:26862729 3.70E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13039 PF04770 ZF-HD_dimer 7.70E-29 No_clan Blo TF