Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00728 ATGGTTATTGATCTGGTTCATGGCTTCCGATCTGCCATCTCCGGTGGCAAATGCAAAAAACTCCCTGCCCGCGGGCTGGTTTTTTACTCCGATGAACCAAAGAATTTGATGGTTCGGGTTCCTAATTCACGAGCATTGAAGCTTCTTGCCCGTCTTGTGATTTTGGCTTTGTTTGTTGTTTCTTTCCCCTGGTTAGGATCTCTTCTGAGTGGATCCTCGATAGCTTCCAGCCGTTTTGATTTTGGCGATTCTACTTACGCTAATAATAATCGGACGCCGGCGTTTCACCGTCCGGAAAATTATATACTTGTGTATCTTAAGCGATTCGGATCTACTGTAATGGCGATGAGAAAAACAGGTCAGGCTGAGACTAAATCGGCCACAAAGAGCCGTCGACTTTGCGGGTTGGCTGGAGAAGCAAATAAGGAAGCTCTGAACAACCTAGAAGACGTCCTTCTTGAGCCTCCGAGAGCAGCGTCAGGAAAATCCCGGCGATATTTCAAGAGAACCCGATACCTCCCTGACTTAACTGGAGACTCGCTGGAAAGCTACCCCCGGCGAGTTTTCATCGACGTGGGTCCGCCGGAGAAGGACAGTGAAACTGCGACTGGTTGGTTTAAGAAAAACTACCCTACGAGGAATAAGAAGTTTGAGATGTACGAGATAGAAACGGTGACGGAAGAGTCCGTGGCGGCGGCGGCGGCGTCGTCAGGGCGGAAAGAGGTGCCGCAGATGGAGATGTCAGACTGGCTGAGGAAGAATGTGAAAGAAGAGGAGTACGTGGTGGTGAAGGCGGAGGCAGAAGTGGTGGAGGAGATGGTGAAGAGCAAGGCGATACGACTTGTCGACGAGCTTTTCTTGGATTGTAAACCACAAGGACGACGTGTAGGACCATCTGGATCAAACAGAAGCGGCAGACCTTACTGGGAATGCTTAGCACTTTATGGACGTCTCAGAGACGAAGGTGTTGCAGTGCATCAATGGTGGATCTAA 993 49.85 MVIDLVHGFRSAISGGKCKKLPARGLVFYSDEPKNLMVRVPNSRALKLLARLVILALFVVSFPWLGSLLSGSSIASSRFDFGDSTYANNNRTPAFHRPENYILVYLKRFGSTVMAMRKTGQAETKSATKSRRLCGLAGEANKEALNNLEDVLLEPPRAASGKSRRYFKRTRYLPDLTGDSLESYPRRVFIDVGPPEKDSETATGWFKKNYPTRNKKFEMYEIETVTEESVAAAAASSGRKEVPQMEMSDWLRKNVKEEEYVVVKAEAEVVEEMVKSKAIRLVDELFLDCKPQGRRVGPSGSNRSGRPYWECLALYGRLRDEGVAVHQWWI 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25618439 25619731 + BLOR04747 Blo12g00728 67989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00728 330 PANTHER PROTEIN, PUTATIVE-RELATED 87 329 - -
Blo12g00728 330 PANTHER PROTEIN, PUTATIVE-RELATED 33 76 - -
Blo12g00728 330 PANTHER OS02G0760400 PROTEIN 87 329 - -
Blo12g00728 330 PANTHER OS02G0760400 PROTEIN 33 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00728 - - - zju:107421298 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00289 Blo-Chr9:12300845 Blo12g00728 Blo-Chr12:25618439 1.31E-15 dispersed
Blo12g00728 Blo-Chr12:25618439 Blo09g00127 Blo-Chr9:3245968 1.00E-07 dispersed
Blo04g01392 Blo-Chr4:33378404 Blo12g00728 Blo-Chr12:25618439 2.18E-65 transposed
Blo14g00763 Blo-Chr14:22840216 Blo12g00728 Blo-Chr12:25618439 4.57E-29 transposed
Blo11g00013 Blo-Chr11:118759 Blo12g00728 Blo-Chr12:25618439 9.57E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g495 . Blo12g00728 . Bda03g00460 Bpe02g00137 Bpe04g00421 . Bma01g02588 . . . . . . . Cpe06g00451 . . . . . . . . . . . . . . . . . . . Lsi04g02275 Csa03g04487 Chy04g00213 . . . Bda11g00796 . . . . . . Cmo01g01690 Cmo09g00576 . . . . . . . . . . . . . Cla11g01419 Cam11g1475 Cec11g1505 Cco11g1501 Clacu11g1636 Cmu11g1454 Cre11g1872 . . . Cme04g00243
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005325 2 0 3 1 2 0 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00728 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0