Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00733 ATGCACGGTCGCCCCCGCAAACCCCAAAAACCAGAGGATGGAGCTGCTTCGGCAGCCAAAGCCGAGAATCTACGGGCACTTCAAGCTCAGTTCCTCTCATTTCACCATAGCAATACTTACACTAAGGAAGCCACAGAGGTAAGCGCGAGGCTCTTGGAGATCAATCCGGAATTATATACGGCTTGGAATTTCCGGAAGCTTGCTGTCGAACAGTATCTGAGTCAAGCCCAGTCGGATCCCGATTTGATCAAGAGCATTCTCGATGATGAACTTAGAGTGGCGGAGACTGCATTAAAGCAGAATTTTAAGGCCTATGGAGCATGGTACCATCGAAAATGGGTCATCAGTAAGGGACATTCTTCCATTGGTAATGAACTACGGCTTCTAGAACGGTTTCAAAACGCCGATTCTCGGAATTTCCATGCATGGAGTTATCGCAGATTTGTAGCAGCAATGATGAACAGGTCTGAGGAGGAAGAATTAAATTATACCACTGATATGATAAATACAAACTTCAGCAATTACTCAGCGTGGCACAATCGCAGTGCCCATCTGTCATCTTTGTGTAAGCAAAAGGCTAAAGGATTTTCTAACAAAGAAGAGGTGTTGAGTGAGGAGTATGAACTTGTGCACCAGGCTTTTTTCACCGATCCAGACGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTTGATCAAACAGTTAAAAATGATTTTCCTCGACTTATTGCTTCTTGGCCCTCTCACGGTGGCAGTGTGATCGTATCTAAAGATGCGTGCCTCAAGGATTGTGATCTGTGTCCATTTGACAATTTCCTATCCGATGATTTAACATTTCCTCTTTTCCTATACTTTGATCAAGTTGTTGAGGGTGTAAACTCGTCTACTGTTTCTGTTGAATATGTCACCGAAAAAAGCAAAGACCTAGTATGGTTACCTCTGTCAGAAAGTAACTCAAAGATGGCCAAAGTGTGGGTTACTCATCTGAGTTTTTCTGACAAAAGTATCTGTTCCTCTGATTTAATTAATGTAGAAGTCAGCCTTGGACAATCTCAAGGAATTTGTTCTTCTACTGGATATCATTATAGCCATGATACTCATTTTTCTTTCAAAGTTCGTGTAAGGCCTGTCAAACCAAAAGCAGCTAAGAGGGAGGATGGAGAGATGATCTGTTGGAAGGCTGAAAATTTTTTCTTGTATAAAATGCATCCCCAAGAATCAAATCCAGTTATGTCACTTGATCAACTTACTATTAAGGATGATGAGCCTTCAAGTTCTAAGTGGGAAGCTGAGACTATTACCAGTGAAATTGCACTTTTCCGTGAATTGTTGTCAGTGAGTAACTGTAAAATCGGAAAGCTTACACTTGCAAGATTGTTGATGGCTCAATCGAGAATGTCATCATCACAGTCTACTAAAGTAGTCAACTCTCAAGAGGTTCTTGAGCTTTATAATGACTTGATAAAGTTGGATCCTACGCATAGTGGCTACTACAAATCAGAACACAGCGTTCTTTTATTGGAACAGGTAACCTCAAGTTGGGAGTCTCTTTTGAGACACTGCTATTGCTACAGAACACCAACTTTGTCAACTATTTGTCTAAGACTCAATGGTTTATCAATATCACGTATAGGATTAATAGAGAGATACTTGTGGGTCCAGATGCTAGATCTCAGCCATAATGAACTTCAATCAATCGAAGGACTGGAGGCTTTGCAGCTTCTTTCTTACTTAAATCTGAGTAACAATAAACTCAGTAATTTTACAGCTCTAGAGCCATTAAGACTTTTGAAATCATTGAAGGTTTTGAATATCTCCTACAATGAGATAGGTTTGCATTCAATTGACTCGACCAGGTATCTCTGCACTTCGCCATTATCTCACACTAAAGGAGTTAATTGGAATCCGGGTGAATTTTCCATGGATGTTGGTGATCGGGCAAGCTATTGGGAAGCCTATATTATTCTAAAGGACCTAAGCTTGGTACAATTAGATACCATGGGCAATTCGATATCAAACGAGAGATTCAGATCATTTTTGGCCAAGGTTCTGCCCACATTAAAGTGGTTCAATGGTGTAGAAGTATAG 2088 40.71 MHGRPRKPQKPEDGAASAAKAENLRALQAQFLSFHHSNTYTKEATEVSARLLEINPELYTAWNFRKLAVEQYLSQAQSDPDLIKSILDDELRVAETALKQNFKAYGAWYHRKWVISKGHSSIGNELRLLERFQNADSRNFHAWSYRRFVAAMMNRSEEEELNYTTDMINTNFSNYSAWHNRSAHLSSLCKQKAKGFSNKEEVLSEEYELVHQAFFTDPDDQSGWFYHLWLLDQTVKNDFPRLIASWPSHGGSVIVSKDACLKDCDLCPFDNFLSDDLTFPLFLYFDQVVEGVNSSTVSVEYVTEKSKDLVWLPLSESNSKMAKVWVTHLSFSDKSICSSDLINVEVSLGQSQGICSSTGYHYSHDTHFSFKVRVRPVKPKAAKREDGEMICWKAENFFLYKMHPQESNPVMSLDQLTIKDDEPSSSKWEAETITSEIALFRELLSVSNCKIGKLTLARLLMAQSRMSSSQSTKVVNSQEVLELYNDLIKLDPTHSGYYKSEHSVLLLEQVTSSWESLLRHCYCYRTPTLSTICLRLNGLSISRIGLIERYLWVQMLDLSHNELQSIEGLEALQLLSYLNLSNNKLSNFTALEPLRLLKSLKVLNISYNEIGLHSIDSTRYLCTSPLSHTKGVNWNPGEFSMDVGDRASYWEAYIILKDLSLVQLDTMGNSISNERFRSFLAKVLPTLKWFNGVEV 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25658906 25663023 - BLOR04752 Blo12g00733 67994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00733 695 SUPERFAMILY L domain-like 532 610 - -
Blo12g00733 695 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 ProSiteProfiles Leucine-rich repeat profile. 574 595 IPR001611 GO:0005515
Blo12g00733 695 Pfam Protein prenyltransferase alpha subunit repeat 87 116 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 Pfam Protein prenyltransferase alpha subunit repeat 204 233 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 Pfam Protein prenyltransferase alpha subunit repeat 158 181 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 Pfam Protein prenyltransferase alpha subunit repeat 124 152 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 Gene3D Ribonuclease Inhibitor 519 695 IPR032675 -
Blo12g00733 695 Gene3D Protein prenylyltransferase 1 245 - -
Blo12g00733 695 SUPERFAMILY Protein prenylyltransferase 8 504 - -
Blo12g00733 695 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 PANTHER - 1 602 - -
Blo12g00733 695 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318|GO:0018342
Blo12g00733 695 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 602 - -
Blo12g00733 695 ProSiteProfiles Leucine-rich repeat profile. 552 573 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00733 K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60] - qsu:112021956 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00670 Blo-Chr4:6032674 Blo12g00733 Blo-Chr12:25658906 4.65E-06 dispersed
Blo07g00087 Blo-Chr7:1281546 Blo12g00733 Blo-Chr12:25658906 2.40E-10 dispersed
Blo10g00273 Blo-Chr10:3924984 Blo12g00733 Blo-Chr12:25658906 4.50E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g527 . Blo12g00733 . . . . . . . . Cma01g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01530 . . . . . . . . . . . . . . Cla11g01428 Cam11g1484 Cec11g1516 Cco11g1511 Clacu11g1647 Cmu11g1464 Cre11g1882 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00733 Blo_Chr12 FPKM 8.132312 8.297343 7.440223 5.387171 7.534172 6.578975 9.479259 10.656649 8.583327 9.009149