Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00736 ATGAACATTGTAAAGGGTGTAGCTGACCTTATTAGAAGGACTTCAAGTGGCCAAACTGGGGAGTCTATTTTGGGGTCACACGCTCAAAGGTTCAGTCCTGGTCCAAAAATTTGCTTCAGATTTGAAAAGAAGATAGGCCATACTGATCTGAAATCATTGCCTTGGTTGCTTATTGCTAAAGTTGATGCATATTCCTGGTGCTTGTCTCCTTATTTTCTTCTGGGAACCATTCTAAAGATGGGGGAAAGGAGAGGGCTTTTTCATGTTTTTCTGAAGCAATTCCTAGTTGCATACAAGAACTGGAAACCAGTTAATTTTGGATCTCTTTCAGAAAATGGTTTTACAACTGCTCGTCCTTTGGAGAATTCATCACATTCTCAGGATATTGTTGTTGGTTGTTCTACTGGACATCCTGCTGAAATCATCTTGATATTGGTAGAAGAGATTTCGCACTTAACTGCAATGGTCTCAGAGTCGCCATCATCAGACCGCTTGTTAAAAGGTTCTACCAGCTCATATATCACATCTGAAGGCTTACCTATCTTGGAATCTTTAACAATTGTTACTCGTTCACTGCACAACTGCAAAGTATTTGGATATTATGGAGGAATTCAAAAGCTTATAGCGTTGATGAAAGGGGCAGTTGTTCAGCTTAAGACAACTGGTGCAGTTTTTGCTGATGAAAGCGTATCTAATGTAGTCATTGATATAATTGGCATTCTCCAACAGATACTTGTATATGTGGTGTCAATAGTGCACAATTTTATCAACTTGGATTCGATCTTATTGGAACACATGAAAACTGATAGCTTTGTCTTGGAAAGCTCTCCTGATACTTCTATTAGTTGTAACCTTTCTGCGAAGGAGGAAAAGTTACATTGGCATCAGAAGGCAGTTGTGTCAGTGATGGAAGCTGGTGGCGTTAATTGGTTAGTAGAGCTCCTACGGGTCGTTAGAAGGTTGAACATGACAGATTTGAATATGGATATAATGCTTCAGTTTTTGACTCTAAGGATTCTCTGTTCTGCCTTGTCCGAGAATCCAAGGGGTCAAAATCATTTCAAAAGCCTTGGGGGACTTGAGGTTTTGTTGGATGGTCTTGGACTTCCATCAAATAATTTCATATTGGAGGACTTTGTTGGCGTTGATGAGAAGAGAAATGAGAATGCATTTGTCAATGAGTTGCAGCTACATGTTCTTTCTCTACAGGTTCTTAGAGAGGCTGTTTTTGGAAATTTGAATAACTTGCAGTTTTTGTGCGAAAATGGTAGAATCCATAAGTTTGCTAATAGTCTTTGTGCCCCTGCTTTCACCCTTCAAGATTATGAACAGCATACTATGGATTCATCAGGGATGCATGATATTCGGTCTTCTAAACTTGACAATAAAATGGAGAATTTATTAGAAACTCAATCAAAAGAGTTATTGGCTGCACTTCGAGTGCATCCCTCTTGTTCTCAGTTGTGGGATAATTATACTGTTAAGTTATGCAGTGTGCTCTGTTCTTTTCTTTTTGTACCAGAACATGATAAAGTTTTTCATATTCAAATACCTTCTGCTCGAGCCTCCATGCCAATTTCTTCAATGTATGGTGAGCTTTCAATCAGATGGTTCATACGAGCTCTTCAAACTGTGTTCCCTTGTATAAAAGCCTGTTCAAATCAAAACAAGCTTCCAAGCACCCTAAGGGTTTTTGTCAACGCTTTGCAGCAGTGTATTCTTACTGAATTTAGAAGGATTCTCGTTTCTTCTCCAATCTCACTTGAAGTATTTCGGGATGAGGGGATGTATGACCTTCTATTTTCTGAAAACGTTTTCTATTATGAACCTGCTTTTGAGGAGTTTTCTGAAGAGTATAATACAGTTAGGGAAGGGTTTCAAGGGAAACCTTGTATCAATTTTGATAAAAATGGAGTGAAGGTTCTTGGGGCCGATATTCTGCAAATAGAAGTGATTTCAATGGTGGAATTCGCTGCAACCTCCTGTGGAAGTACACACAACTTGCCTGAATTGTCTGCGTTATTAGATGCATTCGAACAGTCTGCTTCTAATCCAGAGGTTGCTAATATTATTGCAAAGAGTCTGCTTCGAATATTACAACTCTCAACTGAGAAAACTATTGCTTCATTTAAGACACTTGATGCTGTTTCTCGATTACTTCAAGTTGCTTGCATGCAAGCCCAAGAATATAGAAGGTGTGAAAATACAAAATCTTTATCTGAGGATAGTTATGTTGAAGTAGTCACGCCCAACAGTCCTTGGATATCTAATTCACATGAGATAGCCCATACTTGGCTTTGTTGCATGGAGACATCTGTAGAATTGTTTTCTGGATTTTTCTTAATAGGAGACGATGCAAAAAGTTTGGTTTTGCATAACTCCACATGTATAGATTGCTTATTTGATTTATTTTGGGAAGAAAGTGTAAGGAATCATGTTTTCAAGCACATTCTTGAACTGATGAAGACTCTTCCATATTTTGAGGAAGATCAAAAGTCAAAATTGCTTCTTTGTTCTAAATATCTGGAAACCTTCACTCAAATAAAGGAGAGAGAGAAACGGTTTGTGGAGCTGTCTATTGAGTTATTGGTTGGAATTAGGGAGATGCTTCTGATTGATCCTCCATACTATCAGGCTTTGTTTCGTGATGGAGAGTGCTTTCTTCATATTGTCTCTTTACTGAATGGTAATGTTGACGAAGAAAGTGGTGAAATGCTTGCTTTGAATGTTCTTCAAACTCTAACGTATCTGCTTGCAAACAATGATGTCTCAAAGTTGAAGTATGACCCACAGCCACATTTTTGGCCAATGAGGTTCGTGGAATTGGAGATAAACTCTGTCTCAGCAACTCTACACGAGGAGGATGAGGAGGACCTTCTTTTATTATGCCAATCAAGTAGTGACGAAGATATGGACATGGCTGAGAGTAGGCCTAGACGCCCACCACAAGCAGAATGCAGCTTTGCTGTCCTGTGCATTCAATTCACGAGGAGATCTCCTGAGGAATTTGTGCATGCGTGCTACCGGCAAACATATATGGCGATAGTACGAGATGTGGACGAGGCGCCAAGCCGGACAGTGCTGCCTAGAAGACATATGAACATGACCTGTGCTCGATGTGGGGGTGTGGGGCACAATTCCCGCACGTGCGAAGGTGGAGGCGAGTCCAGTGCATGGGGCGGCAGAGGTGACAGAGGCAGAGATAGAGGCAGAGCCAAAGACAGAGGCGGCAGAGGAAGGTCGGAGGACACATTTATGAGTTTCAGAGTCCCCGAGACAATTCCTGCCATATTCCCTGAGACAATTCCTACCATAGTCTCTGAGATAGCTCCTAAGACGCAGGAGTATGATGCACAAGGTCCACAAACACAAACATACACAAATGTGGACCTTAACCTTCCTTGA 3405 40.62 MNIVKGVADLIRRTSSGQTGESILGSHAQRFSPGPKICFRFEKKIGHTDLKSLPWLLIAKVDAYSWCLSPYFLLGTILKMGERRGLFHVFLKQFLVAYKNWKPVNFGSLSENGFTTARPLENSSHSQDIVVGCSTGHPAEIILILVEEISHLTAMVSESPSSDRLLKGSTSSYITSEGLPILESLTIVTRSLHNCKVFGYYGGIQKLIALMKGAVVQLKTTGAVFADESVSNVVIDIIGILQQILVYVVSIVHNFINLDSILLEHMKTDSFVLESSPDTSISCNLSAKEEKLHWHQKAVVSVMEAGGVNWLVELLRVVRRLNMTDLNMDIMLQFLTLRILCSALSENPRGQNHFKSLGGLEVLLDGLGLPSNNFILEDFVGVDEKRNENAFVNELQLHVLSLQVLREAVFGNLNNLQFLCENGRIHKFANSLCAPAFTLQDYEQHTMDSSGMHDIRSSKLDNKMENLLETQSKELLAALRVHPSCSQLWDNYTVKLCSVLCSFLFVPEHDKVFHIQIPSARASMPISSMYGELSIRWFIRALQTVFPCIKACSNQNKLPSTLRVFVNALQQCILTEFRRILVSSPISLEVFRDEGMYDLLFSENVFYYEPAFEEFSEEYNTVREGFQGKPCINFDKNGVKVLGADILQIEVISMVEFAATSCGSTHNLPELSALLDAFEQSASNPEVANIIAKSLLRILQLSTEKTIASFKTLDAVSRLLQVACMQAQEYRRCENTKSLSEDSYVEVVTPNSPWISNSHEIAHTWLCCMETSVELFSGFFLIGDDAKSLVLHNSTCIDCLFDLFWEESVRNHVFKHILELMKTLPYFEEDQKSKLLLCSKYLETFTQIKEREKRFVELSIELLVGIREMLLIDPPYYQALFRDGECFLHIVSLLNGNVDEESGEMLALNVLQTLTYLLANNDVSKLKYDPQPHFWPMRFVELEINSVSATLHEEDEEDLLLLCQSSSDEDMDMAESRPRRPPQAECSFAVLCIQFTRRSPEEFVHACYRQTYMAIVRDVDEAPSRTVLPRRHMNMTCARCGGVGHNSRTCEGGGESSAWGGRGDRGRDRGRAKDRGGRGRSEDTFMSFRVPETIPAIFPETIPTIVSEIAPKTQEYDAQGPQTQTYTNVDLNLP 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25693567 25708533 + BLOR04755 Blo12g00736 67997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00736 1134 MobiDBLite consensus disorder prediction 1061 1082 - -
Blo12g00736 1134 PANTHER BEIGE/BEACH-RELATED 1 925 - -
Blo12g00736 1134 MobiDBLite consensus disorder prediction 1049 1084 - -
Blo12g00736 1134 MobiDBLite consensus disorder prediction 1116 1134 - -
Blo12g00736 1134 PANTHER BEACH DOMAIN-CONTAINING PROTEIN B 1 925 - -
Blo12g00736 1134 Pfam Neurobeachin alpha solenoid region 667 927 IPR046852 -
Blo12g00736 1134 MobiDBLite consensus disorder prediction 1114 1134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00736 - - - qsu:112022100 1043.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00736 Blo-Chr12:25693567 Blo02g00994 Blo-Chr2:38556515 7.98E-59 dispersed
Blo14g00653 Blo-Chr14:13424671 Blo12g00736 Blo-Chr12:25693567 4.71E-44 dispersed
Blo18g00577 Blo-Chr18:8357068 Blo12g00736 Blo-Chr12:25693567 2.00E-19 dispersed
Blo12g00736 Blo-Chr12:25693567 Blo02g00669 Blo-Chr2:17946477 1.68E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g530 . Blo12g00736 . Bda03g00451 . Bpe04g00414 . . . . Cma01g01471 . . . . . . . . . . . . . . . . . . . . Cone4ag1289 . . . Lsi04g02285 Csa03g04501 Chy04g00200 . . . . . . . . . . Cmo01g01527 . . . . . . Cpe02g00481 Bhi09g02508 . . . Hepe01g2176 Mch11g0715 . Cla11g01433 Cam11g1487 Cec11g1521 Cco11g1517 Clacu11g1649 Cmu11g1467 Cre11g1885 . . . Cme04g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003187 1 6 2 1 1 0 2 0 2 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00736 Blo_Chr12 FPKM 6.562617 5.936323 14.509896 16.35778 39.961945 40.773365 41.533272 19.522024 22.35532 19.906487