Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00738 ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCAGATACCTTCTGTTCCCGACGACGAAGATGACGGTGCAGGCACCGATCCATTGGACAACCCCCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCCGGCGCTGTTGGTGAAGATGTCGCGTCCGACGACGTGTACGTTCCCTCTGCTGGGGGTGTGGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACGCCTGATAAGGTTCAAGCGGTATTACTGCTGTTGGGGGGATGCGAGCTATCTACGACCCAGCCAGGCGTGGAGATGGGGAATCAGAATCTGAGGAGTGTGATGGACTTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGCAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGTTGGGATGCTGTCCAAGAGTTGGGGCAAGTTGAAAGCCCTCCAGAAGCTTTATGTACACATTGTGGTATAAGCTCAAAAGCCACTCCCATGATGCGGCGAGGCCCATCTGGACCAAGGTCTCTGTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTCACAGAGCAGGGTGAAGTTGATGCAACCGACTCCGACTCTGGAACACCCATCCATACTCAGAAAAATCTTGCTCACTTACCTAAAAGTGACCAATCAGCTCTAATGGCAGAGCACTAG 891 50.39 MFGHSQPLNMHNQIPSVPDDEDDGAGTDPLDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSTTQPGVEMGNQNLRSVMDFPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPEALCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFTEQGEVDATDSDSGTPIHTQKNLAHLPKSDQSALMAEH 296
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 25745729 25749121 + BLOR04757 Blo12g00738 67999
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00738 296 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 SMART tify_2 72 107 IPR010399 -
Blo12g00738 296 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Blo12g00738 296 MobiDBLite consensus disorder prediction 250 296 - -
Blo12g00738 296 PANTHER GATA TRANSCRIPTION FACTOR 28 1 271 IPR045280 GO:0006355
Blo12g00738 296 MobiDBLite consensus disorder prediction 254 285 - -
Blo12g00738 296 MobiDBLite consensus disorder prediction 1 33 - -
Blo12g00738 296 Gene3D - 200 255 IPR013088 GO:0006355|GO:0008270
Blo12g00738 296 CDD ZnF_GATA 207 253 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 Pfam tify domain 75 106 IPR010399 -
Blo12g00738 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 252 - -
Blo12g00738 296 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Blo12g00738 296 PANTHER GATA TRANSCRIPTION FACTOR 25 1 271 - -
Blo12g00738 296 Pfam CCT motif 139 181 IPR010402 GO:0005515
Blo12g00738 296 ProSiteProfiles GATA-type zinc finger domain profile. 207 260 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00738 Blo-Chr12:25745729 Blo17g00100 Blo-Chr17:844071 6.83E-69 dispersed
Blo01g00577 Blo-Chr1:6299053 Blo12g00738 Blo-Chr12:25745729 7.03E-06 transposed
Blo03g00029 Blo-Chr3:1402467 Blo12g00738 Blo-Chr12:25745729 1.75E-52 transposed
Blo03g00030 Blo-Chr3:1409011 Blo12g00738 Blo-Chr12:25745729 1.09E-16 transposed
Blo11g00004 Blo-Chr11:40146 Blo12g00738 Blo-Chr12:25745729 7.49E-48 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13040 PF06203 CCT 1.80E-15 CL0281 Blo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00738 - - jre:109021175 403.29