Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00738 ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCAGATACCTTCTGTTCCCGACGACGAAGATGACGGTGCAGGCACCGATCCATTGGACAACCCCCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCCGGCGCTGTTGGTGAAGATGTCGCGTCCGACGACGTGTACGTTCCCTCTGCTGGGGGTGTGGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACGCCTGATAAGGTTCAAGCGGTATTACTGCTGTTGGGGGGATGCGAGCTATCTACGACCCAGCCAGGCGTGGAGATGGGGAATCAGAATCTGAGGAGTGTGATGGACTTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGCAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGTTGGGATGCTGTCCAAGAGTTGGGGCAAGTTGAAAGCCCTCCAGAAGCTTTATGTACACATTGTGGTATAAGCTCAAAAGCCACTCCCATGATGCGGCGAGGCCCATCTGGACCAAGGTCTCTGTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTCACAGAGCAGGGTGAAGTTGATGCAACCGACTCCGACTCTGGAACACCCATCCATACTCAGAAAAATCTTGCTCACTTACCTAAAAGTGACCAATCAGCTCTAATGGCAGAGCACTAG 891 50.39 MFGHSQPLNMHNQIPSVPDDEDDGAGTDPLDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSTTQPGVEMGNQNLRSVMDFPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPEALCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFTEQGEVDATDSDSGTPIHTQKNLAHLPKSDQSALMAEH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25745729 25749121 + BLOR04757 Blo12g00738 67999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00738 296 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 SMART tify_2 72 107 IPR010399 -
Blo12g00738 296 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Blo12g00738 296 MobiDBLite consensus disorder prediction 250 296 - -
Blo12g00738 296 PANTHER GATA TRANSCRIPTION FACTOR 28 1 271 IPR045280 GO:0006355
Blo12g00738 296 MobiDBLite consensus disorder prediction 254 285 - -
Blo12g00738 296 MobiDBLite consensus disorder prediction 1 33 - -
Blo12g00738 296 Gene3D - 200 255 IPR013088 GO:0006355|GO:0008270
Blo12g00738 296 CDD ZnF_GATA 207 253 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 Pfam tify domain 75 106 IPR010399 -
Blo12g00738 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 252 - -
Blo12g00738 296 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Blo12g00738 296 PANTHER GATA TRANSCRIPTION FACTOR 25 1 271 - -
Blo12g00738 296 Pfam CCT motif 139 181 IPR010402 GO:0005515
Blo12g00738 296 ProSiteProfiles GATA-type zinc finger domain profile. 207 260 IPR000679 GO:0006355|GO:0043565
Blo12g00738 296 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00738 - - - jre:109021175 403.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00738 Blo-Chr12:25745729 Blo17g00100 Blo-Chr17:844071 6.83E-69 dispersed
Blo01g00577 Blo-Chr1:6299053 Blo12g00738 Blo-Chr12:25745729 7.03E-06 transposed
Blo03g00029 Blo-Chr3:1402467 Blo12g00738 Blo-Chr12:25745729 1.75E-52 transposed
Blo03g00030 Blo-Chr3:1409011 Blo12g00738 Blo-Chr12:25745729 1.09E-16 transposed
Blo11g00004 Blo-Chr11:40146 Blo12g00738 Blo-Chr12:25745729 7.49E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00738 . 65 258 Tify Gene Family AT4G24470 63.5 8.3e-61 231.1
Blo11g00004 . 1 240 Tify Gene Family AT4G24470 52.2 1.3e-53 207.2
Blo17g00100 . 25 241 Tify Gene Family AT1G51600 52.2 9.7e-51 197.6
Blo12g00738 . 46 265 Tify Gene Family AT1G51600 51.8 8.2e-50 194.5
Blo12g00738 . 65 258 Tify Gene Family AT4G24470 63.5 8.3e-61 231.1
Blo11g00004 . 1 240 Tify Gene Family AT4G24470 52.2 1.3e-53 207.2
Blo17g00100 . 25 241 Tify Gene Family AT1G51600 52.2 9.7e-51 197.6
Blo12g00738 . 46 265 Tify Gene Family AT1G51600 51.8 8.2e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13040 PF06203 CCT 1.80E-15 CL0281 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00738 Blo_Chr12 FPKM 1.93138 2.132939 1.050605 1.355945 5.817797 5.980075 4.941858 0.714593 0.788182 0.6815