Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g00738 | ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCAGATACCTTCTGTTCCCGACGACGAAGATGACGGTGCAGGCACCGATCCATTGGACAACCCCCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCCGGCGCTGTTGGTGAAGATGTCGCGTCCGACGACGTGTACGTTCCCTCTGCTGGGGGTGTGGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACGCCTGATAAGGTTCAAGCGGTATTACTGCTGTTGGGGGGATGCGAGCTATCTACGACCCAGCCAGGCGTGGAGATGGGGAATCAGAATCTGAGGAGTGTGATGGACTTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGCAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGTTGGGATGCTGTCCAAGAGTTGGGGCAAGTTGAAAGCCCTCCAGAAGCTTTATGTACACATTGTGGTATAAGCTCAAAAGCCACTCCCATGATGCGGCGAGGCCCATCTGGACCAAGGTCTCTGTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTCACAGAGCAGGGTGAAGTTGATGCAACCGACTCCGACTCTGGAACACCCATCCATACTCAGAAAAATCTTGCTCACTTACCTAAAAGTGACCAATCAGCTCTAATGGCAGAGCACTAG | 891 | 50.39 | MFGHSQPLNMHNQIPSVPDDEDDGAGTDPLDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSTTQPGVEMGNQNLRSVMDFPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPEALCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFTEQGEVDATDSDSGTPIHTQKNLAHLPKSDQSALMAEH | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 25745729 | 25749121 | + | BLOR04757 | Blo12g00738 | 67999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g00738 | 296 | Pfam | GATA zinc finger | 207 | 243 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00738 | 296 | SMART | tify_2 | 72 | 107 | IPR010399 | - | |
Blo12g00738 | 296 | ProSitePatterns | GATA-type zinc finger domain. | 207 | 234 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00738 | 296 | ProSiteProfiles | Tify domain profile. | 72 | 107 | IPR010399 | - | |
Blo12g00738 | 296 | MobiDBLite | consensus disorder prediction | 250 | 296 | - | - | |
Blo12g00738 | 296 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 271 | IPR045280 | GO:0006355 | |
Blo12g00738 | 296 | MobiDBLite | consensus disorder prediction | 254 | 285 | - | - | |
Blo12g00738 | 296 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Blo12g00738 | 296 | Gene3D | - | 200 | 255 | IPR013088 | GO:0006355|GO:0008270 | |
Blo12g00738 | 296 | CDD | ZnF_GATA | 207 | 253 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00738 | 296 | Pfam | tify domain | 75 | 106 | IPR010399 | - | |
Blo12g00738 | 296 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 252 | - | - | |
Blo12g00738 | 296 | ProSiteProfiles | CCT domain profile. | 139 | 181 | IPR010402 | GO:0005515 | |
Blo12g00738 | 296 | PANTHER | GATA TRANSCRIPTION FACTOR 25 | 1 | 271 | - | - | |
Blo12g00738 | 296 | Pfam | CCT motif | 139 | 181 | IPR010402 | GO:0005515 | |
Blo12g00738 | 296 | ProSiteProfiles | GATA-type zinc finger domain profile. | 207 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00738 | 296 | SMART | GATA_3 | 201 | 254 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo12g00738 | Blo-Chr12:25745729 | Blo17g00100 | Blo-Chr17:844071 | 6.83E-69 | dispersed | |
Blo01g00577 | Blo-Chr1:6299053 | Blo12g00738 | Blo-Chr12:25745729 | 7.03E-06 | transposed | |
Blo03g00029 | Blo-Chr3:1402467 | Blo12g00738 | Blo-Chr12:25745729 | 1.75E-52 | transposed | |
Blo03g00030 | Blo-Chr3:1409011 | Blo12g00738 | Blo-Chr12:25745729 | 1.09E-16 | transposed | |
Blo11g00004 | Blo-Chr11:40146 | Blo12g00738 | Blo-Chr12:25745729 | 7.49E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13040 | PF06203 | CCT | 1.80E-15 | CL0281 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g00738 | - | - | jre:109021175 | 403.29 |