Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00739 ATGAATATCCCCTTTTCTCACCCCACATCTCCTTACAGCCAAAAGCAACAGAAAATCATAATTATCTACTACATGTATTTCCCAAACTACCCTCTTCTCGTCAGCTCCTGTATTAAGCTTCATACTTCCCTTGGATATCCTCTGGTTGGACCTTGTCTGAGGCCTTTTTGCGCCTTGAAATGTGATCTTAACAATCAAATTTATGATGGTCATATTATAGAAGGCGACAGACCTATACCTTCTTCAAATATCAACTTACATTATGCTCACTGCGCCCGTAATCTAGAAAAATGTAAAGTATGTGGTGATATGGTTCCCAAGAGACATGCAGAGGAACATTTCTTTAACACTCACGCTCCAGTACCCTGCTCACTGTGCAGTGAAACAGTAGAGCGTGAAATTTTAGCCATTCATAAAGGTGAAAATTGCCCTCAAAGGATTGTAACGTGCGAATTCTGTGAATTTCCATTGCCTGCCATAGATTTAGCTGAACATCAGTATGTGGAAACCGGACAGAACTTTGTCATATGTGTCATAGATATATTAGACTGCGAGAAAGATACAACCATGAAAGCCGATGCGGTGGTTTTACAGATAATACTGCCGGATCTTCGAGATTTTCCAACTAAGAATCGAGGTCCTCAAATGTTAACTCAAGGGGTGAGATTACGGCTACAAGGTCGTCATGTGGTGATGGATAATGGCATATTGCAAGTAACATTATCCAACCCGGAGGGAATCATTACTGGAATACAATATAATGGTGTTGACAATCTGCTTGAAATTCTTAACAACGAATCAAATAGAGGAAAATTGGACTTCGATTTTTTTTTTCGGAAGAAGAAGACCTTAATATTTTTGGTTTGGAATGCCAGGTATTGGGACCTTGTTTGGAGTGCACCAGGAGGCAAAGGAATATTCGATGTGATTAAAGGAACACGTTTCAGGGTGGTTGTAGAAAATGAAGAACAGGTGGAGCTCTCATTTACGAGAATGTGGGAGCCTTCTCTTGAGGGCAAGGTTGTTCCTTTAAATATTGACAAAAGGTTTGTCATGCTACGCGGTTCCTCGGGGTTTTATTCCTATGGAATTTATGAGCACTTAAAGGAGTGGCCTGATTTTGACCTTGGTGAAACCAGAATCGCGTTCAAACTCAGAAAAGACAAGTTTCAGTACATGGCAGTAGCAGACAACAGGCAAAGATTCATGCCTCTGCCTGATGACCGCCTGATTCCAAGATGCCAAACATTAGCTTATCCAGAAGCCGTTCTGCTCACCAATCCTAAAAATAAAGAACACAAAGGCGAGGTGGATGACAAATATCAATATTCATGTGAGAACAAAGATCTAAGAGTTCATGGATGGATTTGCACCAATCCACCCACAGGGTTCTGGCAGATTACCCCAAGTGATGAATTTCGGTCGGGTGGGCCCCTCAAACAGAATCTAACGTCACATGTGGGGCCAACCACCCTTGCTGTCTTTCTCAGTGGTCACTATGCTGGACATGATTTGGTGCCGAAATTTAGAAATGGGGAACCATGGAAGAAGGTTTTTGGCCCTGTTTTTATTTATCTTAATTCCACAACAGCTGAAGATGATTCATTTTGGTTGTGGGAGGATGCTAAGATACAGATGATGACTGAAGTCCAAGGCTGGCCATATAGTTTTCCTGCTTCTAGGGATTTCCCAAAATTAGATCAGCGGGGTAATGTTCGTGGAAGGCTACTTGTCCTTGATAGCAAAACCAACATACCAGCAAGTGGTGCCTATGTTGGCTTAGCCCCACCTGGCAATGCAGGATCATGGCAAAGAGAGTGCAAGGATTATCAATTTTGGACGAGAGCAGATAATGATGGCTATTTTACTATTAACCATGTCCGTGCTGGAGACTATAATCTTTACTCATGGGTCCCTGGCTTTATTGGAGACTATCATTTTGATGCTGTCATTACCATAGTGTCTGAATCTTTCATCGAAATGGGTGACCTTGTATATCAACCGCCAAGAAGTGGGCCAACTTTGTGGGAAATAGGCATCCCTGATCGTTCCGCTGCGGAGTTTTTTGTTCCTGATCCCAATCCGTCCCATGTGAATAATATATTTGTCAATCATCCTGACAGGTTCAGACAGTATGGTTTATGGGAGAGATACACAGAATTGTATCCTGACGAGGATTTGATTTACACAGTTGGTATTAGTGACTTTAGTAAGGATTGGTTCTTTGCTCAGGTGCCCAGGAAGATAGACAATAACACATATCGAGGAACTACTTGGCAAATCAAATTTAACCTTGACAGTGTCAATCAGAAAACCATTTACACGCTCCGAGTTGCAATCGCCTCAGCTACTTTGGCTGAACTGCAGGTTCGGGTTAATGATCCTGGATCTAGGCGCCCTTTATTCACCACGGGTTTGATAGGGAGAGACAATTCAATTGCAAGGCTTGGAATTCATGGGCTTTACTGGCTGTACAGTGTGGATATATCGGGTCCGAATCTGGTGGAAGGGGCTAATACAATCTTTTTTACACAACCACGATGCACCAGTCCTTTCCAAGGTATCATGTATGATTATATTCGTTTAGAAGGCCCCCCTTATTGTAGTTCTCAGCATTAG 2619 42.34 MNIPFSHPTSPYSQKQQKIIIIYYMYFPNYPLLVSSCIKLHTSLGYPLVGPCLRPFCALKCDLNNQIYDGHIIEGDRPIPSSNINLHYAHCARNLEKCKVCGDMVPKRHAEEHFFNTHAPVPCSLCSETVEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQYVETGQNFVICVIDILDCEKDTTMKADAVVLQIILPDLRDFPTKNRGPQMLTQGVRLRLQGRHVVMDNGILQVTLSNPEGIITGIQYNGVDNLLEILNNESNRGKLDFDFFFRKKKTLIFLVWNARYWDLVWSAPGGKGIFDVIKGTRFRVVVENEEQVELSFTRMWEPSLEGKVVPLNIDKRFVMLRGSSGFYSYGIYEHLKEWPDFDLGETRIAFKLRKDKFQYMAVADNRQRFMPLPDDRLIPRCQTLAYPEAVLLTNPKNKEHKGEVDDKYQYSCENKDLRVHGWICTNPPTGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGHDLVPKFRNGEPWKKVFGPVFIYLNSTTAEDDSFWLWEDAKIQMMTEVQGWPYSFPASRDFPKLDQRGNVRGRLLVLDSKTNIPASGAYVGLAPPGNAGSWQRECKDYQFWTRADNDGYFTINHVRAGDYNLYSWVPGFIGDYHFDAVITIVSESFIEMGDLVYQPPRSGPTLWEIGIPDRSAAEFFVPDPNPSHVNNIFVNHPDRFRQYGLWERYTELYPDEDLIYTVGISDFSKDWFFAQVPRKIDNNTYRGTTWQIKFNLDSVNQKTIYTLRVAIASATLAELQVRVNDPGSRRPLFTTGLIGRDNSIARLGIHGLYWLYSVDISGPNLVEGANTIFFTQPRCTSPFQGIMYDYIRLEGPPYCSSQH 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25750097 25758081 - BLOR04758 Blo12g00739 68000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00739 872 ProSiteProfiles Zinc finger TRAF-type profile. 109 153 IPR001293 GO:0008270
Blo12g00739 872 Pfam Polysaccharide lyase family 4, domain III 674 862 IPR029411 -
Blo12g00739 872 Gene3D - 222 546 IPR014718 GO:0030246
Blo12g00739 872 CDD RGL4_N 221 535 - -
Blo12g00739 872 Pfam Polysaccharide lyase family 4, domain II 588 655 IPR029413 -
Blo12g00739 872 Gene3D - 566 652 - -
Blo12g00739 872 Gene3D - 671 863 - -
Blo12g00739 872 CDD RGL4_C 676 863 - -
Blo12g00739 872 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 210 868 - -
Blo12g00739 872 Pfam Rhamnogalacturonate lyase family 221 277 IPR010325 -
Blo12g00739 872 Pfam Rhamnogalacturonate lyase family 290 437 IPR010325 -
Blo12g00739 872 SUPERFAMILY Galactose mutarotase-like 363 533 IPR011013 GO:0003824|GO:0005975|GO:0030246
Blo12g00739 872 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 210 868 - -
Blo12g00739 872 SUPERFAMILY Starch-binding domain-like 565 648 IPR013784 GO:0030246
Blo12g00739 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 172 IPR013083 -
Blo12g00739 872 CDD RGL4_M 568 664 IPR029413 -
Blo12g00739 872 SUPERFAMILY Galactose-binding domain-like 671 863 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01118 Blo-Chr4:17836789 Blo12g00739 Blo-Chr12:25750097 0 dispersed
Blo12g00739 Blo-Chr12:25750097 Blo17g00101 Blo-Chr17:848563 0 dispersed
Blo11g00003 Blo-Chr11:28014 Blo12g00739 Blo-Chr12:25750097 7.31E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00739 K18195 - jre:109004812 1073.92