Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo12g00741 | ATGTCATCCCCCTTCGAACACAATCTAGATAACGACCACCACTTCATCTTCTCATCATCAAATTCATTATTCCCCCTGCAAAGCGTTGAATGTTCCCCATACAACACCTTGGAGAAAACCCGTTTTGCAGTTCAGCAAGATTTCCTCGTTTCTGCAAATGACGATAAAGAAGAACTAGCAATACTTGCTGAACCCAGAAACGGATCAAGTAAGCCGGCGAGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGGAGAAGAAAGAGATTGAACGACCGTCTTTCTATGCTACGATCCATTGTCCCAAAAATAAGAAAGATGTCTCAAAGTTTAGTGGTAAAATGCATGATTTTCTTCTCATTCTTTTCAATGCTCGATGTACAGATGGATAGAACAGCCATACTAGGAGACGCCATAGTTTACACCAAACAACTTCTGGAAAAAATCAACAACTTGCAGCAAGAAATTGAAATAGATTCTAACCACCAGTTCCAGATGAGCGTTTTCAAGAATGTTAAGCCAAATGAGTTTCTAGCGAGAAATCCACCAAGGTTTGATGTGGAAAGGAGAAAAGAAGACACACGGATAGAGATTTCCTGTTCCAGTAAATATGGGATGCTGTTATCCACAGTGAATGCCCTTGAAGCATTAGGCCTCGAGATTCAGCATTGTGTTATTAGCTGCTTCAATGACTTCACAATGCAAGCTTCCTGTTCAGAGGAACTGGAGCATAGAGACTTAATAAGCCAAGAGGAAATCGAACAAGCTTTACTTCAAAACTCAGGATATGGAGGAAGATGCCTTTAG | 807 | 41.02 | MSSPFEHNLDNDHHFIFSSSNSLFPLQSVECSPYNTLEKTRFAVQQDFLVSANDDKEELAILAEPRNGSSKPARQPSKNLMAERRRRKRLNDRLSMLRSIVPKIRKMSQSLVVKCMIFFSFFSMLDVQMDRTAILGDAIVYTKQLLEKINNLQQEIEIDSNHQFQMSVFKNVKPNEFLARNPPRFDVERRKEDTRIEISCSSKYGMLLSTVNALEALGLEIQHCVISCFNDFTMQASCSEELEHRDLISQEEIEQALLQNSGYGGRCL | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 25767279 | 25768318 | + | BLOR04760 | Blo12g00741 | 68002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo12g00741 | 268 | MobiDBLite | consensus disorder prediction | 64 | 85 | - | - | |
| Blo12g00741 | 268 | Gene3D | - | 67 | 161 | IPR036638 | GO:0046983 | |
| Blo12g00741 | 268 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 62 | 108 | - | - | |
| Blo12g00741 | 268 | Pfam | Helix-loop-helix DNA-binding domain | 80 | 109 | IPR011598 | GO:0046983 | |
| Blo12g00741 | 268 | SMART | finulus | 80 | 151 | IPR011598 | GO:0046983 | |
| Blo12g00741 | 268 | Coils | Coil | 142 | 162 | - | - | |
| Blo12g00741 | 268 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 67 | 157 | IPR036638 | GO:0046983 | |
| Blo12g00741 | 268 | PANTHER | HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED | 128 | 268 | - | - | |
| Blo12g00741 | 268 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 74 | 145 | IPR011598 | GO:0046983 | |
| Blo12g00741 | 268 | PANTHER | HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED | 62 | 108 | - | - | |
| Blo12g00741 | 268 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 128 | 268 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Blo12g00741 | Blo18g00096 | CCT | |
| Blo12g00741 | Blo17g00087 | CCT | |
| Blo01g01790 | Blo12g00741 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo12g00741 | Blo-Chr12:25767279 | Blo04g00576 | Blo-Chr4:4936815 | 1.49E-12 | dispersed | |
| Blo11g00599 | Blo-Chr11:5911159 | Blo12g00741 | Blo-Chr12:25767279 | 1.65E-24 | transposed | |
| Blo16g00289 | Blo-Chr16:6960858 | Blo12g00741 | Blo-Chr12:25767279 | 3.90E-27 | transposed | |
| Blo01g01790 | Blo-Chr1:57630646 | Blo12g00741 | Blo-Chr12:25767279 | 1.24E-88 | wgd | |
| Blo12g00741 | Blo-Chr12:25767279 | Blo17g00087 | Blo-Chr17:677593 | 1.24E-51 | wgd | |
| Blo12g00741 | Blo-Chr12:25767279 | Blo18g00096 | Blo-Chr18:810869 | 1.92E-07 | wgd | |
| Blo12g00741 | Blo-Chr12:25767279 | Blo05g00723 | Blo-Chr5:25340011 | 1.75E-13 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 13041 | PF00010 | HLH | 6.60E-06 | No_clan | Blo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo12g00741 | - | - | gmx:100814388 | 249.595 |