Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00754 ATGAGTACGGAAGAAACTGGCAGTAGCTTATACTCATTCTCCTCGCCGTCTTCGATGGCTCAATCCCTTCAACACCCACTGTCCATTTCCTCGAGCTCAGACCCGAAAAAGACAAAGCGAATACGAGACTCGAGCAAACACCCGATCTACAGAGGAGTTCGAATGAGAAATTGCGGTAAATGGGTTTCTGAGATTCGCGAACCTAGAAAGAAATCTCGTATTTGGCTTGGAACCTTCCCTACCCCGGAAATGGCTGCAAGAGCACACGATGTCGCCGCTTTAAGCATCAAAGGTACCTCCGCCATTCTTAACTTCCCAGAACTCGCCGACTCCCTTCCTCGACCGGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCCGCGGCGAAGGCCGCTCAGATGGAGATATTCGACTCTTCGCAGTCAATGTCATCTTCTTCTTCGCTGTCGTCGCTCGTGTCTATGATGGATTTGTCTTCTCCACCAGCAACGCATAAATCAGAGGAGTTGAGCGAGATCCTGGAATTGCCGAGTCTGGGGAATGCATATGATTCGTACGAGTTGAGCAGGGAGTTTGCGTTTTTTGAATCGGCGGATAGCTGGGCTTATCCGCCGCCATGGTTGCAGAGCATGGAGGAGTGTGGATACAACAATAAAGCAAGAGACGAGGAGGGGATCGGAGAGAGTAGCGAGTACGTTTTATGGGATTACTGA 711 51.05 MSTEETGSSLYSFSSPSSMAQSLQHPLSISSSSDPKKTKRIRDSSKHPIYRGVRMRNCGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEIFDSSQSMSSSSSLSSLVSMMDLSSPPATHKSEELSEILELPSLGNAYDSYELSREFAFFESADSWAYPPPWLQSMEECGYNNKARDEEGIGESSEYVLWDY 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25896657 25897367 - BLOR04773 Blo12g00754 68015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00754 236 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Blo12g00754 236 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Blo12g00754 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 14 219 - -
Blo12g00754 236 MobiDBLite consensus disorder prediction 1 47 - -
Blo12g00754 236 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Blo12g00754 236 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Blo12g00754 236 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Blo12g00754 236 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Blo12g00754 236 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Blo12g00754 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 219 - -
Blo12g00754 236 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Blo12g00754 236 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00754 Blo-Chr12:25896657 Blo16g01019 Blo-Chr16:38553246 9.72E-56 dispersed
Blo01g01775 Blo-Chr1:57464582 Blo12g00754 Blo-Chr12:25896657 4.25E-105 wgd
Blo12g00754 Blo-Chr12:25896657 Blo17g00070 Blo-Chr17:534712 2.36E-82 wgd
Blo12g00754 Blo-Chr12:25896657 Blo18g00081 Blo-Chr18:691852 5.23E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13043 PF00847 AP2 2.50E-12 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00754 K09286 - tcc:18587975 250.366