Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00756 ATGGCAGTATCTTCCTTCGTTTTACATGGATATGTTCCTAAGAATTCATTATCTTCCAGCTTTGATCGTTTGAAAACCACACTTTCATCAGCTGCAAAGCCAGTTAAGCCATCCTTCAAAAACATTCATGAATTATCAATGAAGTTTGATGTTTCAAATGCTATTGAAATCACAACAAAAACGTGCTTGGATGCATTTGTAGATTCTACATATGAGTTTCTCCCGCAGCAATTTCTGCCTTCTCAGAGAAACTTTGCACCAGTTGAAGAAATTGGAGAAGCCGTTGAAATCATTTGCTGTGAAGGAGAGATTCCCAGTGATTTTCCGGAGGGGGTTTTTATAAGAAATGGTCCAAATCCTCTATTCGGCGGGCTACAAACCACTGTTTCAATTTTTGGAAGAACAAGCAACATCTGGGTGGAAGGTGAAGGAATGCTTCATGCAGTATATTTCAAGAAGAATGATAATGGAGATTGGAGCTTCTCCTACAAAAACAGATACGTTGAATCTGAAACATTTAAGATGGAAAAGAAGAGGAATAAACCATCTTTCATTCCTGCCATCGAAGGTGATTCACTCGCCATTATAGCAGCATACTTCCTAAACATGTTGAGATTTGGCACAGTCAATAAGTTATTGAATAATACTAGTGTTTTCAAACATTCGGGGAAACTTTATTCAATTTCGGAGAATCACCAGCCTCAAGAGATTGACATATCTTCCTTGGAAACTTTGGACACATGGGAGCATAAAGAACATTGGAATCGTCCAATGGGCAGCCATCCGAAGAAAGCTCCGAGCTCCGGGGAGCTGGTTATAATGGGGGTTGATGCAGTTAAACCTTATTATGTAGTTGGAGTTTGGTCTGCTGATGGAAAGACACTTGTGCATAAGGCTGATCTAAATTTCAAAAGATGTTGTCTCAGCCATGATATTGGAGTGACAGAAAAGTACAATATTATCATGGATCATCCCCTTATAATTGATGGGAAGAGGCTTTTGAAGGGTGGCCCTTTGATTAAGTTCGAGAATGAAGGATTTGCAAGAATTGGAGTGATGCCTCGTTATGGAGATGCCGATTCTGTTCGCTGGTTTGAAGTTCAACCTCACTGCACATTTCACATTCTTAATTGCTTTGAAGATGGCGATGAGGTAGTGGTAAGAGGATGCAGATCTCTTAATTCAGTAGTGCCAGGACCGGAAATGGGTTCAGACAAGCTAGAATGGTTTTCAAGAGGTTTCAATTTCACGAAACAAAATGAAGAACGCCATGAAATTGATGTTTTGCGAGACGGGTATTTGTTCAGCAACTCGTATGAATGGAGATTGAACATGGCATCTGGAAAAAGGGAAGAGAGGAAACTAACTGCAACAGATTTCTCTATGGATTTTCCGTTCATCAATGACAAATTCTGTGGCCTCAAACACAACTATGGCTACACCCAGGTTATTAATTCTCAGGCCAGCTCTATCTCTGGTATGGGCAAGTATGGAGGTCTTGCTAAATTATCCTTCAACGAACAAAGCCCATCAATGACATCAAGAACAAGTGAAGGTACAGTGAAAGTGGAGTATCACATGTTTGAGGAGAACACCTTCTGCACAGGAAGTGTTTTCGTTTCCAAGGATGCAGCCACTGAAGAAGACGATGGGTGGATCATTACTCATGTCCACAACGAAGATGCTGATTCGTCCCAAGTTTATGTGATCGATGCTCAGAAGTTTGAGGATAAACCAGTAGCGAAAATTGCACTGCCGCAGAGGGTGCCATACGGGTTTCACGGAGCTTTTATACGATTATGA 1803 40.93 MAVSSFVLHGYVPKNSLSSSFDRLKTTLSSAAKPVKPSFKNIHELSMKFDVSNAIEITTKTCLDAFVDSTYEFLPQQFLPSQRNFAPVEEIGEAVEIICCEGEIPSDFPEGVFIRNGPNPLFGGLQTTVSIFGRTSNIWVEGEGMLHAVYFKKNDNGDWSFSYKNRYVESETFKMEKKRNKPSFIPAIEGDSLAIIAAYFLNMLRFGTVNKLLNNTSVFKHSGKLYSISENHQPQEIDISSLETLDTWEHKEHWNRPMGSHPKKAPSSGELVIMGVDAVKPYYVVGVWSADGKTLVHKADLNFKRCCLSHDIGVTEKYNIIMDHPLIIDGKRLLKGGPLIKFENEGFARIGVMPRYGDADSVRWFEVQPHCTFHILNCFEDGDEVVVRGCRSLNSVVPGPEMGSDKLEWFSRGFNFTKQNEERHEIDVLRDGYLFSNSYEWRLNMASGKREERKLTATDFSMDFPFINDKFCGLKHNYGYTQVINSQASSISGMGKYGGLAKLSFNEQSPSMTSRTSEGTVKVEYHMFEENTFCTGSVFVSKDAATEEDDGWIITHVHNEDADSSQVYVIDAQKFEDKPVAKIALPQRVPYGFHGAFIRL 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25903705 25907892 + BLOR04775 Blo12g00756 68017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00756 600 PANTHER BETA-CAROTENE DIOXYGENASE 31 598 IPR004294 GO:0016702
Blo12g00756 600 Pfam Retinal pigment epithelial membrane protein 87 598 IPR004294 GO:0016702
Blo12g00756 600 PANTHER OS06G0162550 PROTEIN 31 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00756 - - - vvi:100242297 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00756 Blo-Chr12:25903705 Blo14g00728 Blo-Chr14:18699085 1.45E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g296 . Blo12g00756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02332 Csa03g04551 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005967 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 4 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00756 Blo_Chr12 FPKM 4.638824 4.299714 5.721662 10.623818 51.59726 29.967607 39.698906 37.772232 34.584682 28.402666