Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00760 ATGGTAGAACGCTCCACTAGTGATTTGCTGATTGGTCCTGATTGGGCCATGAATATAGAGATCTGTGACATGCTCAATAAGGACCCCGGGCAAACAAAAGATGTTATGAAAGGTATAAAGAAGCGCCTTAAAAGTAAGAACACGAAAGTTCAACTTCTTGCCTTGACGCTATTGGAGACCATCGTTAAGAACTGTGGCGACGTCGTACATATGCATGTGGCAGAGAAGGATGTTCTGCATGAGATGCTAAAAATAGTAAAGAAGAAGCCTGATTTTCATGTCAAAGAGAAGATATTGATGCTGATTGATACCTGGCAAGAAGCTTTTGGTGGACCTAGGGCAAGATATCCGCAATACTATGCTGCATACCAGGAATTATTGCGCTCTGGTGCAGTTTTTCCTCAGAGAATGGAGAGGTCTGGCCCTGTACTTACACCACCACAGACACAACCCTTGACATCATATCCTCAAAATCTGTATAATCCTGATTATCATACTGACAGAGCTGGATCTTCTGCTGAGTCTGAATTTCCAACTTTAAGCTTGTCTGAAATTCAGAATGCGCGGGGAATTATGGATGTCCTAGCCGAAATGCTAAATGCAATAGATCCAGTGAACAAGGAGGGCTTAAAGGAAGAAGTTATTATTGATTTAGTGGAACAATGTCGTATTTACAAGCAGAGAGTGGTTCATCTTGTTAACTCCACCCAGGACGAGTCACTGCTTTGCCAAGGCCTAGCACTCAATGATGATTTGCAGCGTGTGCTTGCCAAGCATGAAGCTATTGCTTCGGGAACATTACGTGAGACACAGGAACCCAAGCCTGAACCTTCAAAAGCACTTGTTGACATAGGTGGTCCGCTTGTTGATACTGAATCCACCAGCAAACAATCTGAACCAAGATCGACGTCAAGTGCTGGCACAAGATCTCAAACACTTAATCAGCTATTGCTCCCGGGACCTCCTGCTACTGATGGTTCAGCTCCTGTAGTGAAGGCTGACTCTATCGACCTGCTGAGTGGCGATAACTATAATTCACCAAAGGCAGATACTTCTCTGGCTCTTGTTTCATTGGGAGAGCAGCATCCTACCACTCCCCAATCACAGCAGAATGCCCTTGTTCTTTTTGACATGTTTTCTGATGGTAACAATGCAACTAATTCTGCCAATCAGACTGAACAAGCCATTCCTTTGCCTTCCCAAATTCAAGGATATGACAGTCTCCAATCTCCACGAAGTGGATTTTATCCAAATGGAAATGCTCCAAACTTGGGTTCGCCTCACTACAAGCAGTCAGTACATGAGATGCAGGGTTCTGGTTTTGCTTGGAATAGTGGTCAGTTTACTCAGCAACAGCAACAGCAACAATCGCTTTCACCAACCTACGGAATTGGTGGCCAAGGTGGTGAATCATTGCCAGCACCCCCGTGGGAATCTCAGCCTGTTGATAACAATGGCTTTGCAGATACTCAACACACAGCTTATCCGATGCAGGGTGCCCATGTCATTACCCCAGGACTTCAACCAGTGGGGAACAATCCTGTGTATTTCCAGTCTATTATGAGTGGACAATCACAGCCAATCACTGGTCCGGGCGGTATGAGCAATCAATTCGGCTTCCACCAGCAGCAGATTCCAGGACCACACATGCTTATGTTTCCGCAGCCAATCCAGCCAGGCCAGACGGCATCTTTTTATTATCCCCACCCGTACGGCAACCAACATGCCAGTTATGGCTATGTTCAACCCCAGGGGGGTCAATATTTGCAGCAACAAATGAATGGACTTTCTGTAACGAGTGGGAGAAATTCTTCCAACCAGGGTCCCACCTCATCTTACGTCCCACCAAGTAAGGCTACTAAGCCAGAGGATAAGCTATTTGGAGACCTTCTTGACATGGCCAATGCAGGGGCGTACGACAACTTGATTGAATGCCGAAGGTTGGTTATTCGAGTGAAACACCTCCATAGTTTTGCGCTTTGTGGCCTATTTAGTGCCCTGAGAGGGAGAATGCAGGCATCAAGGGCAAGGCTGTTCAAGGAATATAAGGAAGTGCAGAGAGAAAAAGCAGTTGATCCAGATATTCAACTAGTTTGCGATGATTCTAACATATTTAAGTGGACTGCTCTTATTAAGGGACCATCAGAGACTCCGTACGAGGGCGGGGTTTTCCAACTTGCGTTTGCTGTTCCTGAGCCGTATCCTTTGCAACCCCCTCAAGTGCGGTTCTTAACTAAAATTTTTCATCCAAATGTACACTTCAAGACTGGTGAGATTTGCCTAGACATATTAAAGAATGCATGGAGCCCTGCTTGGACGCTCCAATCTGTTTGTAGGGCTATAATTGCTTTGATGGCACATCCCGAACCTGACAGCCCACTGAACTGTGATTCCGGCAATCTTTTGCGCTCTGGCGATATTAGAGGCTTTCAGTCAATGGCGAGGATGTATACCAAACTAGCTGCCATGCCCGAGAAAGGTTGA 2484 45.89 MVERSTSDLLIGPDWAMNIEICDMLNKDPGQTKDVMKGIKKRLKSKNTKVQLLALTLLETIVKNCGDVVHMHVAEKDVLHEMLKIVKKKPDFHVKEKILMLIDTWQEAFGGPRARYPQYYAAYQELLRSGAVFPQRMERSGPVLTPPQTQPLTSYPQNLYNPDYHTDRAGSSAESEFPTLSLSEIQNARGIMDVLAEMLNAIDPVNKEGLKEEVIIDLVEQCRIYKQRVVHLVNSTQDESLLCQGLALNDDLQRVLAKHEAIASGTLRETQEPKPEPSKALVDIGGPLVDTESTSKQSEPRSTSSAGTRSQTLNQLLLPGPPATDGSAPVVKADSIDLLSGDNYNSPKADTSLALVSLGEQHPTTPQSQQNALVLFDMFSDGNNATNSANQTEQAIPLPSQIQGYDSLQSPRSGFYPNGNAPNLGSPHYKQSVHEMQGSGFAWNSGQFTQQQQQQQSLSPTYGIGGQGGESLPAPPWESQPVDNNGFADTQHTAYPMQGAHVITPGLQPVGNNPVYFQSIMSGQSQPITGPGGMSNQFGFHQQQIPGPHMLMFPQPIQPGQTASFYYPHPYGNQHASYGYVQPQGGQYLQQQMNGLSVTSGRNSSNQGPTSSYVPPSKATKPEDKLFGDLLDMANAGAYDNLIECRRLVIRVKHLHSFALCGLFSALRGRMQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTKLAAMPEKG 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25937278 25949747 - BLOR04779 Blo12g00760 68021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00760 827 PANTHER TOM1-LIKE PROTEIN 1 636 IPR044836 GO:0035091|GO:0043130|GO:0043328
Blo12g00760 827 Gene3D Ubiquitin Conjugating Enzyme 670 822 IPR016135 -
Blo12g00760 827 Pfam Ubiquitin-conjugating enzyme 677 817 IPR000608 -
Blo12g00760 827 MobiDBLite consensus disorder prediction 290 318 - -
Blo12g00760 827 CDD UBCc 677 818 IPR000608 -
Blo12g00760 827 MobiDBLite consensus disorder prediction 447 491 - -
Blo12g00760 827 CDD GAT_GGA_like_plant 184 262 - -
Blo12g00760 827 ProSiteProfiles VHS domain profile. 5 134 IPR002014 GO:0035091|GO:0043130
Blo12g00760 827 SUPERFAMILY UBC-like 669 823 IPR016135 -
Blo12g00760 827 SUPERFAMILY GAT-like domain 135 265 - -
Blo12g00760 827 CDD VHS 1 128 - -
Blo12g00760 827 Pfam GAT domain 190 264 IPR004152 GO:0035091|GO:0043130
Blo12g00760 827 SUPERFAMILY ENTH/VHS domain 1 134 IPR008942 -
Blo12g00760 827 SMART VHS_2 1 130 IPR002014 GO:0035091|GO:0043130
Blo12g00760 827 MobiDBLite consensus disorder prediction 597 617 - -
Blo12g00760 827 MobiDBLite consensus disorder prediction 403 431 - -
Blo12g00760 827 MobiDBLite consensus disorder prediction 266 327 - -
Blo12g00760 827 SMART ubc_7 676 823 - -
Blo12g00760 827 Pfam VHS domain 2 125 IPR002014 GO:0035091|GO:0043130
Blo12g00760 827 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 748 764 IPR023313 -
Blo12g00760 827 PANTHER TARGET OF MYB PROTEIN 1 1 636 - -
Blo12g00760 827 MobiDBLite consensus disorder prediction 447 464 - -
Blo12g00760 827 Gene3D - 179 271 IPR038425 -
Blo12g00760 827 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 673 823 IPR000608 -
Blo12g00760 827 ProSiteProfiles GAT domain profile. 176 264 IPR004152 GO:0035091|GO:0043130
Blo12g00760 827 Gene3D - 1 134 IPR008942 -
Blo12g00760 827 MobiDBLite consensus disorder prediction 597 620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00760 - - - qsu:112015330 773.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00760 Blo18g00073 CCT
Blo01g01770 Blo12g00760 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01314 Blo-Chr1:50287278 Blo12g00760 Blo-Chr12:25937278 6.24E-88 dispersed
Blo07g01107 Blo-Chr7:30945047 Blo12g00760 Blo-Chr12:25937278 1.11E-90 dispersed
Blo09g00295 Blo-Chr9:12664484 Blo12g00760 Blo-Chr12:25937278 5.59E-62 dispersed
Blo12g00760 Blo-Chr12:25937278 Blo12g01115 Blo-Chr12:28802490 6.76E-101 dispersed
Blo01g01771 Blo-Chr1:57437038 Blo12g00760 Blo-Chr12:25937278 7.88E-108 transposed
Blo04g00991 Blo-Chr4:12771842 Blo12g00760 Blo-Chr12:25937278 1.13E-46 transposed
Blo05g00405 Blo-Chr5:5070358 Blo12g00760 Blo-Chr12:25937278 6.40E-21 transposed
Blo09g00216 Blo-Chr9:9763130 Blo12g00760 Blo-Chr12:25937278 1.94E-37 transposed
Blo16g00573 Blo-Chr16:23439401 Blo12g00760 Blo-Chr12:25937278 7.65E-32 transposed
Blo01g01770 Blo-Chr1:57430090 Blo12g00760 Blo-Chr12:25937278 0 wgd
Blo12g00760 Blo-Chr12:25937278 Blo18g00073 Blo-Chr18:586970 4.79E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45