Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00765 ATGACCACCCGCGAGGCTCCTGTCTCGATCTCCATCTCCATCTCCTCCACTTCTAATCTTACAGGGTTTGTTCTTGCTGTGGTTTCTAGTGCTTTTATTGGGTCCAGTTTTATAATTAAGAAGTTGGGTCTTCAATTAGCCGGTGCATCGGGTGTTCGAGCTAATTCAGGAGGATATGGGTATCTATTGCAGCCGCTTTGGTGGCTTGGAATGGTAACCATGATTGTTGGGGAGCTTGCTAATTTTGTGGCCTACATTTACGCTCCTGCTGTTCTTGTCACTCCACTCGGAGCACTGAGTATAATTGTAAGTGCTGTTCTAGCTCATTTTTTCTTGAAGGAACAACTGAAGAAAATGGGTATAGTGGGTTGTGTTTTGTGTGTCGTTGGATCGACTGTGATTGTCCTCCATTCACCTGCTGAACTTACTCTAACTTCCGTGGACGAGATCTGGGACCTTGCCACTCGACCAGCATTTCTTTTGTATGCAGCCTCAGCTGCCGTTTTAGCATTGTTCTTGGTGTTGTATTGTGAGCCACGCTTTGGGCAGACGAACATTATTGTCTACATCGGCATTTGTTCAGTTATTGGATCTTTGACGGTAATGAGCATTAAAGCAATTGGCATTGCAATAAAACTCACTGTGGAAGGTTTGGACCAAGCAGGACATTATCAAACCTGGGCTTTGGATACATTCAACACAGCCGTTGTTTCTCCGATATATTACGCGCTATTTACTACTTTCACGATTTTGGCCAGTGCTATAATGTTCAAGGATTGGTCTGGTCAAAGTGCTAGCAGTATTGTCTCAGTGATTTGTGGATTTATAACAATTCTTTCCGGGACGATGGTGTTGCACAACACGAGGGCACCCGATCAAGCTTCTATTTCGGATTTCTATGGACCCTTTTCTCCTCAAGTGTCCTGGTTTATCCATCCGAAGGGTGATGCATGGAAGCCGATAGATCAGGAGAAACTTTTACCAGATTTTGATTCCATTCTTAAACAAGACCATTTCTCATAG 1023 43.99 MTTREAPVSISISISSTSNLTGFVLAVVSSAFIGSSFIIKKLGLQLAGASGVRANSGGYGYLLQPLWWLGMVTMIVGELANFVAYIYAPAVLVTPLGALSIIVSAVLAHFFLKEQLKKMGIVGCVLCVVGSTVIVLHSPAELTLTSVDEIWDLATRPAFLLYAASAAVLALFLVLYCEPRFGQTNIIVYIGICSVIGSLTVMSIKAIGIAIKLTVEGLDQAGHYQTWALDTFNTAVVSPIYYALFTTFTILASAIMFKDWSGQSASSIVSVICGFITILSGTMVLHNTRAPDQASISDFYGPFSPQVSWFIHPKGDAWKPIDQEKLLPDFDSILKQDHFS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26011874 26014561 + BLOR04784 Blo12g00765 68026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00765 340 PANTHER MAGNESIUM TRANSPORTER-RELATED 228 339 - -
Blo12g00765 340 Pfam Magnesium transporter NIPA 18 289 IPR008521 GO:0015095|GO:0015693|GO:0016021
Blo12g00765 340 PANTHER MAGNESIUM TRANSPORTER-RELATED 17 228 - -
Blo12g00765 340 PANTHER UNCHARACTERIZED 228 339 IPR008521 GO:0015095|GO:0015693|GO:0016021
Blo12g00765 340 PANTHER UNCHARACTERIZED 17 228 IPR008521 GO:0015095|GO:0015693|GO:0016021
Blo12g00765 340 SUPERFAMILY Multidrug resistance efflux transporter EmrE 64 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00765 K22733 NIPA, SLC57A2S; magnesium transporter - jre:108982538 491.115
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01754 Blo12g00765 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00105 Blo-Chr12:7673944 Blo12g00765 Blo-Chr12:26011874 6.75E-121 dispersed
Blo12g00765 Blo-Chr12:26011874 Blo16g00671 Blo-Chr16:26240429 2.74E-115 dispersed
Blo04g00555 Blo-Chr4:4784193 Blo12g00765 Blo-Chr12:26011874 2.28E-113 transposed
Blo01g01754 Blo-Chr1:57310293 Blo12g00765 Blo-Chr12:26011874 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1289 Blo01g01754 Blo12g00765 . Bda03g00417 Bpe02g00188 . . Bma01g02537 . . Cma01g00941 . . . . Cpe06g00921 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00847 . . . . . . Cmo01g00981 . . . . . . . Bhi09g01565 Tan01g2974 . . . . . Cla09g00961 Cam09g1013 Cec09g1016 Cco09g1028 . . Cre09g0976 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00765 Blo_Chr12 FPKM 0.933856 1.757169 1.32025 0.910242 4.648349 6.277194 5.945582 0.737106 0.276818 0.277454