Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00768 ATGGGAAGTTCTTACCCCATTCCTATCTCTCCACAAAAGACCCGTATTGGGTGGATCGGCATCGGCGTAATGGGCGCTGCGATGGCGTCCCGTCTCCTGTCTGCCGGTTACTCCGTCACCATATACGCTCGCAGTCCCTCTAAGGCTGTTTCATTACAGTCCAAAGGAGCCCTTCTCTCCGATTCTCCATTTCAGTTAGCGCAGTCAAGCGATGTCGTGTTCACAATAGTGGGACACCCGCGAGATGTTCGACAATCTGTCTTAGGGAACCTCGGCATTCTCCCCGGCTTAAACGCAAACGGGGTGATCGTCGATATGACCAGCAGCCACCCCGCGCTCGCACGCGAGATCTCTGCCTCCGCCCACGTTAAAAGCTGTTGGGCCGTGGATGCCCCCGTTTCTGGCGGCGATGTTGGTGCTAGAGACGGAAAGTTAGCCATATTCGCTGGTGGCGAAGCTGATGTAATCGAGTGGTTATCCCCATTATTTGAAATATTAGGCAAGGCAACATATATGGGGCAAGCAGGGGGTGGGCAGAGCTGCAAGATAGCTAATCAGATAACAGTTGCGGCCAACTTGATCGGACTGAGGGAAGGGTTGGTGTTTGCAGAGCGAGCGGGGCTGGATTTGAAACAGTTTGTAGAAGCAGTGAGGGGCGGGGCTGCCGGGTCGATGGCAATGGAGATATTCGGGGAGAGGATGATCGGAAGAGATTTCAGGCCAGGTAGGGTCTGTGAATATATGGTGAAGGATTTGGGAATGGGCGTAGATGTTGTGGAGGAAAGTGAGGATAAGAGGGTGGCCGTGCTGCCGGGCGCTGCATTGTGTAAGCAGCTTTTCTCTGCAATGGCGGCTAATGGCGATGGCAAACTTGAATTGGATCTTTTATTGGCTGTGACCCAAGAGTTCGTCTGGCAACGAGCAGGCGTGATTGTAATTATGGCAATTGACTGTGATGTGTTGGAAAAATATGCTCATTTTCCCGTTTTGTTTCTTCTTATTTCCTTTTCTGCTCAAGGGTTTTCTCTTCACTACAGCTCTCAGATTTTGGAGTACTTAAATAAAACGATGTTGAAATTGACGATTCCTCGCATTAAGCTGCTTAGGAACCGAAGAGAAATTCAGATAAGGCAGATGCGTCGGGACATTGCCAAGCTTCTTGAGACTGGTCAAGAAGCTACTGCCCGCATTCGGGTAGAGCATATCATTAGAGAAGAGAATATGATGGCTGCCCAAGAGATTCTTGAGCTGTTTTGCGAGCTCATTGCTGTCCGCCTTCCTATAATTGAATTACAAAGGTTAGAATGTCCCCTAGACTTGAAAGAAGCTATATCAAGTGTGTGTTTTGCTGCACCAAGATGTGCCGATCTACCAGAGTTGCTGCAGGTTCAACTGCTTTTTGCGTCAAAATATGGGAAAGAATTTGTTTCTGCTGTAACTGAGCTCAAGCCAGATTGTGGTGTTAATCGTCAGTTAATCGAACTGCTATCTATTCGGGCTCCGTCAGCTGAAAAAAAATTGAATCTTTTGAAAGAAATTGCTGAAGAGCATAAAGTGGATTGGGATCCAGCTGCCTCTGAAACAGAGCTTTGTAAATCTCATGAAGATTTACTTTTTGTCAGCGGATCAAAATTGCCACTTCCAAAAGAGAAACATGATGAAACATTGGTCTCTACCTCTGGTGAAGCTCATTGGGAACAATCTGATCTTGATACAGATACTGACATACTAGACCTACCTAATGTTCCTATTGAATCGGTATTAGGAGTTCGTACTCCAGGTGTTGCCACTGCACCAGCAGTTGTCCCACCATTGCAGGACGCTCCAGAGCTTGGAAGCAAGGTACATACTCCTGAAAATGTTGATGTGGATTTACAGGATGTGTTGGCTGCTGCTCAGAATGCTGCTGAGTCAGCTGAACGAGCAGCAGCTGCAGCTCGCTCGGCCGCTAGTCTTGCACAGATCAGAATCAGTGAGATCACAAAAAGAAAAAATGAGCAAGTTCCAGATAGCGGCTGTGAGAACCCATTTCATACAGACATGCCTAACCAGATGGATTCTAAGGAGTTGCCAGATATTGGCGAACACAGTTCAAGTGATAGTGTCGTGGTAGAACCTCCTCGGGACGACAAAATTACCCAGGAATCAGAGGATTTCAATGTCACTTCAGTTGAACAAATCGAAGTGAAGGTTGACAATAATTCAATTCATCACACACCTCAAGGATCGCCTTCAATGGAGGATGACACATATTTCTCATATCCAAACTTGTTTACGACGCATAACCCGAGCAAGGAGTCTAGTTCTCATTCTCTCGGAGGAAACTCCCCGTAA 2334 47.26 MGSSYPIPISPQKTRIGWIGIGVMGAAMASRLLSAGYSVTIYARSPSKAVSLQSKGALLSDSPFQLAQSSDVVFTIVGHPRDVRQSVLGNLGILPGLNANGVIVDMTSSHPALAREISASAHVKSCWAVDAPVSGGDVGARDGKLAIFAGGEADVIEWLSPLFEILGKATYMGQAGGGQSCKIANQITVAANLIGLREGLVFAERAGLDLKQFVEAVRGGAAGSMAMEIFGERMIGRDFRPGRVCEYMVKDLGMGVDVVEESEDKRVAVLPGAALCKQLFSAMAANGDGKLELDLLLAVTQEFVWQRAGVIVIMAIDCDVLEKYAHFPVLFLLISFSAQGFSLHYSSQILEYLNKTMLKLTIPRIKLLRNRREIQIRQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIAVRLPIIELQRLECPLDLKEAISSVCFAAPRCADLPELLQVQLLFASKYGKEFVSAVTELKPDCGVNRQLIELLSIRAPSAEKKLNLLKEIAEEHKVDWDPAASETELCKSHEDLLFVSGSKLPLPKEKHDETLVSTSGEAHWEQSDLDTDTDILDLPNVPIESVLGVRTPGVATAPAVVPPLQDAPELGSKVHTPENVDVDLQDVLAAAQNAAESAERAAAAARSAASLAQIRISEITKRKNEQVPDSGCENPFHTDMPNQMDSKELPDIGEHSSSDSVVVEPPRDDKITQESEDFNVTSVEQIEVKVDNNSIHHTPQGSPSMEDDTYFSYPNLFTTHNPSKESSSHSLGGNSP 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26031879 26036429 + BLOR04787 Blo12g00768 68029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00768 777 Gene3D - 9 173 - -
Blo12g00768 777 Gene3D - 352 528 IPR042277 -
Blo12g00768 777 Coils Coil 369 396 - -
Blo12g00768 777 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 15 171 IPR006115 GO:0050661
Blo12g00768 777 Coils Coil 629 649 - -
Blo12g00768 777 MobiDBLite consensus disorder prediction 663 777 - -
Blo12g00768 777 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 172 IPR036291 -
Blo12g00768 777 MobiDBLite consensus disorder prediction 717 777 - -
Blo12g00768 777 Pfam Regulator of Vps4 activity in the MVB pathway 355 520 IPR005061 GO:0015031
Blo12g00768 777 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 176 291 IPR029154 GO:0051287
Blo12g00768 777 MobiDBLite consensus disorder prediction 702 716 - -
Blo12g00768 777 PANTHER IST1 FAMILY MEMBER 355 591 IPR005061 GO:0015031
Blo12g00768 777 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 355 591 - -
Blo12g00768 777 PANTHER IST1 FAMILY MEMBER 613 769 IPR005061 GO:0015031
Blo12g00768 777 Gene3D - 174 303 IPR013328 GO:0016491
Blo12g00768 777 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 175 297 IPR008927 -
Blo12g00768 777 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 613 769 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00768 K00020 HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] - fve:101310515 451.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01750 Blo12g00768 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00334 Blo-Chr8:5019486 Blo12g00768 Blo-Chr12:26031879 3.71E-61 dispersed
Blo12g00768 Blo-Chr12:26031879 Blo14g00539 Blo-Chr14:7851807 6.75E-56 dispersed
Blo01g00527 Blo-Chr1:5802266 Blo12g00768 Blo-Chr12:26031879 2.25E-89 transposed
Blo05g00502 Blo-Chr5:8533408 Blo12g00768 Blo-Chr12:26031879 8.33E-14 transposed
Blo05g00693 Blo-Chr5:23306277 Blo12g00768 Blo-Chr12:26031879 6.05E-73 transposed
Blo10g00981 Blo-Chr10:29027454 Blo12g00768 Blo-Chr12:26031879 9.22E-30 transposed
Blo15g00055 Blo-Chr15:427379 Blo12g00768 Blo-Chr12:26031879 1.85E-22 transposed
Blo01g01750 Blo-Chr1:57289251 Blo12g00768 Blo-Chr12:26031879 4.80E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007067 2 0 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 37