Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00780 ATGTCTCACAGGAAGTTTGAGCACCCCAGACATGGTTCACTTGGGTTTCTACCGAGGAAAAGGGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCCAAGGATGACCCAACCAAGCCTTGTAAGCTGACTGCCTTTTTGGGCTACAAGGCAGGAATGACCCATATTGTCAGGGAGGTTGAGAAACCTGGTTCAAAGCTGCACAAGAAGGAGACGTGTGAGGCAGTTACTATCATTGAAACTCCTCCAATGGTCATTGTTGGAGTTGTTGGTTATGTGAAGACACCACGAGGACTCCGTTCGTTGAACACTGTGTGGGCCCAACATCTGAGTGAGGAACTCAGGAGGAGGTTCTATAAAAATTGGTGCAAGTCCAAAAAGAAGGCTTTTACAAAGTACTCCAAGCAGTTTGAAACTGATGAAGGAAAGAAAAGTATTCAAGCACAGCTTGAAAAGATGAAGAAATATGCAACTGTGATACGAGTTGTGGCACATACTCAGATAAGGAAAATGAAGGGATTGAAGCAAAAGAAAGCACACCTGATGGAAATTCAAGTTAATGGTGGGACTATAGCCCAGAAGGTTGACTTTGCATATGGCTTCTTTGAGAAACAAGTTCCTATTGATGCAGTTTTCCAAAAGGATGAAATGATTGATATCATCGGTGTGACTAAAGGTAAAGGTTATGAAGGTGTTGTCACTCGATGGGGTGTCACCCGCCTACCTCGTAAAACCCACAGGGGTCTCAGGAAGGTAGCTTGTATTGGTGCTTGGCATCCTGCCAGAGTATCATTTACAGTTGCAAGGGCTGGTCAAAATGGATATCACCACCGTACTGAAATGAATAAAAAGGTTTATAAGATTGGCAAGGCAGGGCAGGAATCACACACAGCTGTTACTGAATTTGACAGGACTGAGAAAGATATTACTCCTATGGGCGGCTTCCCTCACTACGGTGTTGTGAAAGATGATTATCTATTGATTAAGGGTTGCTGTGTTGGACCTAAGAAAAGGGTGGTGACCCTTCGTCAGTCACTGCTGAAACAGACATCTCGGGTGGCTCTCGAGGAGATTAAACTCAAGTTCATTGACACCTCATCCAAGTTTGGGCATGGTCGCTTCCAGACTACCCAGGAGAAGCAGAAATTCTTTGGGCGTCTCAAGGCTTAA 1170 44.96 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMVIVGVVGYVKTPRGLRSLNTVWAQHLSEELRRRFYKNWCKSKKKAFTKYSKQFETDEGKKSIQAQLEKMKKYATVIRVVAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKAGQESHTAVTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26196583 26199085 - BLOR04799 Blo12g00780 68041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00780 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Blo12g00780 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Blo12g00780 389 Gene3D Translation factors 44 385 - -
Blo12g00780 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Blo12g00780 389 Gene3D - 83 207 - -
Blo12g00780 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Blo12g00780 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Blo12g00780 389 MobiDBLite consensus disorder prediction 1 34 - -
Blo12g00780 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01734 Blo12g00780 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00793 Blo-Chr6:31214036 Blo12g00780 Blo-Chr12:26196583 0 transposed
Blo01g01734 Blo-Chr1:57039789 Blo12g00780 Blo-Chr12:26196583 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00780 K02925 - mnt:21387973 771.541