Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00781 ATGGGTACCAATGGCCGACTCATTGCTGGCTCTCACAACAGAAATGAATTTGTTCTCATCAATGCCGATGAGGTTGCTAGAGTCACTTCAGTGAAAGAGCTAAGTGGGCAAATATGCCAGATCTGTGGAGATGAGATAGAGTTTACTGTAGATGGCGAGCCTTTTGTTGCCTGCAATGAATGTGCATTTCCAGTCTGTAGACCTTGCTATGAGTATGAAAGGAGGGAGGGAAATCAAGCTTGCCCTCAATGCAAAACTCGATACAAGCGTATCAAAGGGTCTCCTCGAGTTGAAGGTGATGAAGAGGAAGACGATATCGATGATTTGGAGAATGAGTTCGACATATCGAGCAAGGATCCTCACTACATTGCTGAGCAAATGCTTTCTTCTCACCTTAATGTTGGCAGAGGCTCTCAAATAAATGGAAATCAAGCGCCTTCGGAATTGGACGCATCTTCCACTCCAATGAACATTCCTCTCCTCACCTATGACCACGAGGATGCTGGAATTTCCTCTGACAAACATGCTCTTATTATTCCGCCTTTTATGAGCCGTGGAAAGAGGGTTCATCCTGTGCCGTTTAGTGATATTTCTGTGACTGCTCAACCAAGGCCGATGGATCCTAAGAAAGATTTAGCTGTCTATGGGTACGGAACTGTTGCTTGGAAAGAAAGAATGGAGGAGTGGAAGAGGAAGCAGAATGAAAAACTCCAGGTCGTTAAGCATGAAGGAGACGGTGGAAACAATTTTGACGATCCAGATTTGCCCATGATGGATGAAGGAAGGCAGCCTTTGTCAAGGAAATTGCCAATTTCTTCGAGCAAGATAAACCCGTATAGAATGATAATAATGCTTCGTATTGTTATTCTCGGCTTGTTTTTTCAATATCGAATTCTCCATCCTGTCAACGATGCCTACGGATTATGGTTAACTTCTGTAATCTGTGAAATATGGTTTGCCGTCTCGTGGATATTGGATCAGTTCCCTAAATGGTGCCCCATCGAACGAGAAACTTACCTCGATCGTCTCTCACTCAGGTATGAAAAGGAAGGAAAGCCATCTGAGTTAGCTTCTGTTGATATATTTGTGAGTACAGTGGATCCTTTGAAAGAGCCTCCACTTATCACAGCCAACACAGTTTTGTCGATATTAGCTGTGGATTACCCTGTTGATAAAGTTGCATGCTATGTTTCGGATGATGGTGCTGCAATGCTTACTTTTGAGGCCCTCTCAGAGACGTCTGAATTTGCGAGAAAGTGGGTCCCCTTTTGCAAAAAGTTTAGTATCGAGCCTAGAGCCCCTGAATGGTACTTTGCCCAGAAGGTCGACTATTTGAAAGATAAAGTCGATCCAGCATTCATTCGAGAACGGCGGGCAATTAAGAGAGATTATGAAGAATTCAAAGTTCGAATCAACGGATTAGTTGCAATGGCGCAAAAGGTGCCTGAAGATGGATGGACTATGCAAGATGGAACTCCATGGCCTGGAAACAATGTTAGAGATCATCCCGGAATGATCCAAGTTTTCCTCGGTCAGAATGGTGTTTGTGACATGGAAGGAAATGAATTACCCCGCCTTGTTTATGTATCCCGTGAGAAGAGACCGGGATTTGAGCATCACAAAAAGGCCGGGGCCATGAACGCATTGGTCCGAGTCTCTGCAATCATCTCGAATGCCCCATACATGCTGAATGTAGATTGTGATCACTACATAAACAACAGTAAGGCACTTAGAGAAGCAATGTGCTTCTTGATGGATCCTATTTGCGGAAAGAAAATCTGCTACGTCCAATTCCCTCAAAGATTTGACGGCATTGATCGCCACGATCGATATTCAAATCGCAATGTCGTCTTCTTCGATATCAATATGAAAGGGTTAGATGGGATCCAAGGGCCAATATATGTTGGAACTGGTTGTGTCTTCCGGAGGCAGGCCCTTTATGGATATGACGCCCCTGCTAAGAAGAGAGCTCCACGGAGGACTTGTAATTGTTGGCCAAAATGGTGCTGCTTGTGTTGCGGATCGAGAAAGAAGAATAATAAGAAGGGGAAGATGAACGAGATAAAGAAGTCCAAGAACAAGGACGGTTCAAAACAGATACATGCTCTAGAAAATATCGAAGAAGGAATTGAAGGAATCGACAGCGAAAAGTCGTCACTGATGCCCCAAGTTAAGTTTGAAAAGAAATTTGGGCAGTCTGCTGTTTTCATAGCTTCAACGCTGAAGGAGAATGGTGGAGTGCCCGAAGGAATATCCTCTGCATCACTCTTGAAGGAAGCAATCCATGTCATTAGCTGTGGATACGAAGACAAAACTGAATGGGGAAAAGACGTTGGTTGGATATATGGCTCCGTTACTGAGGATATATTAACCGGCTTCAAAATGCACTGTCATGGTTGGCGATCCGTCTATTGCATACCCAAAAGACCAGCATTTAAAGGGTCAGCTCCAATTAATCTTTCTGATCGGCTGCACCAGGTTCTTCGGTGGGCTCTTGGGTCAGTTGAGATTCTCTTGAGCAGGCATTGTCCGATATGGTATGGATATGGATGTGGCTTGAAATGGCTTGAGCGCTTTTCCTACATAAACTCCGTTGTTTATCCCTTGACATCCATTCCCTTGATCGCTTATTGTACCTTGCCTGCTGTTTGTCTTCTCACCGGAAAGTTTATCGTCCCCGAGCTTAGTGACTATGCCAGTATCATTTTCATGGCGCTTTTCATATCCATAGCAGCAACAAGTGTGCTTGAAATGCAGTGGGGACGGGTCGGAATTCACGATTGGTGGAGGAACGAACAATTCTGGGTGATTGGTGGTGTTTCGGCCCACCTTTTTGCCTTACTCCAAGGTCTTCTCAAGGTTTTGGCCGGAGTTAACACAAACTTTACAGTCACATCAAAAGCTGCTGACGACGGAGAGTTTTCCGAGCTCTACCTCTTCAAATGGACATCCTTATTGATCGCTCCCATGACTTTACTCATCATAAACATCATTGGAGTTGTCGTCGGAATATCAGATGCCATCAACAACGGCTACGATTCGTGGGGTCCACTCATTGGTAAGCTATTTTTCGCCTTCTGGGTCATAGTCCATCTTTATCCTTTCCTCAAAGGTTTGATGGGGAAACAAGACAAAGTTCCTACCATCATAATCGTCTGGTCCATTCTCCTCTCGTCGATATTCTCGCTTTTATGGGTCCGTATCAACCCGTTCCTGGCCCGGGGTGGCATAGTTTTGGAGGTTTGCGGATTGAATTGTGATAACGATTAA 3270 44.59 MGTNGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEFTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDISSKDPHYIAEQMLSSHLNVGRGSQINGNQAPSELDASSTPMNIPLLTYDHEDAGISSDKHALIIPPFMSRGKRVHPVPFSDISVTAQPRPMDPKKDLAVYGYGTVAWKERMEEWKRKQNEKLQVVKHEGDGGNNFDDPDLPMMDEGRQPLSRKLPISSSKINPYRMIIMLRIVILGLFFQYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDPAFIRERRAIKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDMEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAIISNAPYMLNVDCDHYINNSKALREAMCFLMDPICGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKRAPRRTCNCWPKWCCLCCGSRKKNNKKGKMNEIKKSKNKDGSKQIHALENIEEGIEGIDSEKSSLMPQVKFEKKFGQSAVFIASTLKENGGVPEGISSASLLKEAIHVISCGYEDKTEWGKDVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPELSDYASIIFMALFISIAATSVLEMQWGRVGIHDWWRNEQFWVIGGVSAHLFALLQGLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIAPMTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSIFSLLWVRINPFLARGGIVLEVCGLNCDND 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26213649 26218533 - BLOR04800 Blo12g00781 68042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00781 1089 Pfam Cellulose synthase 359 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Blo12g00781 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 512 654 IPR029044 -
Blo12g00781 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1086 - -
Blo12g00781 1089 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Blo12g00781 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Blo12g00781 1089 PANTHER CELLULOSE SYNTHASE 1 1086 - -
Blo12g00781 1089 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Blo12g00781 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Blo12g00781 1089 SUPERFAMILY RING/U-box 28 107 - -
Blo12g00781 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 373 900 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01663 Blo-Chr1:56383506 Blo12g00781 Blo-Chr12:26213649 0 dispersed
Blo12g00781 Blo-Chr12:26213649 Blo16g00514 Blo-Chr16:20825520 0 dispersed
Blo12g00781 Blo-Chr12:26213649 Blo01g01734 Blo-Chr1:57039789 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00781 K10999 - csv:101214061 1979.91