Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00783 ATGGCGGTTTCCGTTCCTGCAACAACGGTTCCGGCGCTGAATTTTTTTCCTTTGAATCGCATAGCTCCTGCTTCTTCCTTTTCTCCATTGAAATTGTCTTCTTCCTTCTCTCCTGTTCGATTCCCATGGCCTTCTAGTGTTCGAGATGGAAAGAAGGGGGCTATACCTTCGTTTCGACCTAGGATTCTTACGCTGGTCAAAGCAAAGAGGCAAACTTTCTCCTCTTTTGATGATTTGCTGGCAGATTCTGACAAACCTGTTTTGGTGGACTTCTATGCAACTTGGTGTGGTCCTTGTCAATACATGGTTCCTGTCCTCGTGGAAGTAGGCTCTAAGCTAAAGGATACAATTCAGGTGGTCAAAATTGATACTGAAAAATACCCTAGTATTGCCGCGAAATACCATGTAGAAGCCTTGCCGACTTTCATCATTTTCAAGGATGGGAAACCATATGACCGTTTTTTTACTGCAATCAGGCCTGGTTCACATCAACAGCTCTCGAATTCATGTGGCCTGCTCTTTGATTTGAATTCATGCGGTAGATTGAATTCTTCCAACATTTTTGGACTCTTTTCAGGAGGGTGCTTTAACTGCAAATCAGCTCATCGAACGAATAGAAAATACTTTGAAGGTGATGCAGTAGCTGTTGCTGGGTCAGGGAAGCGGCGGACGATGTCTGATCCAAGGAGGAGCAACGCAGGGGGGGAGGAAGACGGAGAAATGGAAATGAGAGCCATGGAGGATACAGAGATTGGAGAGGACCTTACTCCTCCACTCTTTCCTCTCTCTTTCTCCCTCCACCCCTCGTTCCTCCTCTCTCACTGCGCCTCCTGCTTCTCTCCTCTCCCGCTTCCTCTTCCCCCGATCCTCCCCTCCCTCCTCCATTACTGTTCTTCCCAGTGTTCCGATTCCGATTCTCCCTTCTTTTCCTTCTTTCTCTCTTCCGCTTCTTCCCCTATTTCCGTCCATTCATTATCCTCCGACCTCCTTGCCTCCCTACGTCTCCTCTTCCTTCTCCTCCGAACCTTCTCCTCTACCTCCCTCCCTCCCCCACCCTCCCGCATCTTCGGCCTTCTCACTAATAGGGATAAGTTGATGTCTTTGCCCCGGAATGACGACGATGACGAGGAGATTTCAACGAGAATTAAGGACGGCGCTAAGGTGCTAGGTTCTTTCAGAAGGAGAGACTCGTTGGATATCCGGAATGATACGGCATTTGAAGAGGCGGTTCTGTGTTTGGTGATGACTAACGCGGTGGAGGTACTGGATAGTGAGGGGCGCGCACTAGGAATTGCGGTGTATAATGCTGGCTTCAGCTGGATCAACCACAGCTGTTCTCCCAATGCTTCCTACAGGTTTTTGCTGTCTCCGCAGACGGATATGGCGGTTTGTTCTGGCAGAATGAGGCCGAGGATTTTCCCTTCCTTCTTTAGCCCTAACGCTGGCGTTCAAAGTTCTCAAGTGTTTAGCTTCTTCTTGTTCTCTTTAGTTTTATAA 1497 48.43 MAVSVPATTVPALNFFPLNRIAPASSFSPLKLSSSFSPVRFPWPSSVRDGKKGAIPSFRPRILTLVKAKRQTFSSFDDLLADSDKPVLVDFYATWCGPCQYMVPVLVEVGSKLKDTIQVVKIDTEKYPSIAAKYHVEALPTFIIFKDGKPYDRFFTAIRPGSHQQLSNSCGLLFDLNSCGRLNSSNIFGLFSGGCFNCKSAHRTNRKYFEGDAVAVAGSGKRRTMSDPRRSNAGGEEDGEMEMRAMEDTEIGEDLTPPLFPLSFSLHPSFLLSHCASCFSPLPLPLPPILPSLLHYCSSQCSDSDSPFFSFFLSSASSPISVHSLSSDLLASLRLLFLLLRTFSSTSLPPPPSRIFGLLTNRDKLMSLPRNDDDDEEISTRIKDGAKVLGSFRRRDSLDIRNDTAFEEAVLCLVMTNAVEVLDSEGRALGIAVYNAGFSWINHSCSPNASYRFLLSPQTDMAVCSGRMRPRIFPSFFSPNAGVQSSQVFSFFLFSLVL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26236149 26239646 - BLOR04802 Blo12g00783 68044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00783 498 Gene3D - 324 418 - -
Blo12g00783 498 SUPERFAMILY Thioredoxin-like 72 162 IPR036249 -
Blo12g00783 498 Pfam Thioredoxin 72 154 IPR013766 -
Blo12g00783 498 CDD TRX_family 74 154 - -
Blo12g00783 498 SUPERFAMILY SET domain 415 458 IPR046341 -
Blo12g00783 498 ProSitePatterns Thioredoxin family active site. 88 106 IPR017937 -
Blo12g00783 498 MobiDBLite consensus disorder prediction 223 239 - -
Blo12g00783 498 PRINTS Thioredoxin family signature 135 146 - -
Blo12g00783 498 PRINTS Thioredoxin family signature 95 104 - -
Blo12g00783 498 PRINTS Thioredoxin family signature 87 95 - -
Blo12g00783 498 ProSiteProfiles Thioredoxin domain profile. 30 175 IPR013766 -
Blo12g00783 498 Gene3D SET domain 260 462 IPR046341 -
Blo12g00783 498 PANTHER PROTEIN SET DOMAIN GROUP 41 241 484 - -
Blo12g00783 498 MobiDBLite consensus disorder prediction 219 239 - -
Blo12g00783 498 Gene3D - 274 323 - -
Blo12g00783 498 Gene3D Glutaredoxin 67 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00783 - - - jre:109011407 180.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00783 Blo-Chr12:26236149 Blo12g01109 Blo-Chr12:28769175 4.87E-16 dispersed
Blo12g00783 Blo-Chr12:26236149 Blo17g00782 Blo-Chr17:25001885 6.59E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00783 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0