Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00786 ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCATAGTTTTGAGGCAGGGATCCCAGGTCACCATAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCACCAGAACTACTGAGGGATGTCATCAAAGGATTGGAAGCGAGTGAGAGTACTTGGCCTTCACGCAAGCATGTCGTCTCCTGTGCTTCTGTGTGTAGATCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAGTCCAGAGTTTTCCGGCAAGATCACCTTTCCTGTCTCCTTGAAACAGCCAGGGCCTCGAGATGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACCTACCGGCTTTTCCTATGCCTTAGTCCTGCTTTACACGTTGAGAATGGAAAATTTCTTCTTTCGGCGAAACGAACGAGGAGAACTACCTGCACCGAATATGTCATCTCCATGGATGCTGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGCTAAGGTCAAATTTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCGCCTTACAACAGCGTGCAACTTTCACAACCAGGTCGAAGCCGAAGACTTAACTCGAAAAAAGTTTCTCCGAAATTCCCTACAGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGCACGAGGGGTCCACGGAGAATGCACTGCACCATGCATTCGATCCCTGTCTCGGCCATCGAGCCAGGAGGCACCATCCCTGGCCAGCCCGAGCTCCTCCCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCAAAGTCGGTTGATAACAGCACCGAGTTTAGCAGTGCTCGCTTCTCGGACATTGCTAGGTTGAATGAAGATCAAGAAGAAGAACAAGAAGAGGATGAGTCGAAAGAAAAGATCAGACCCTTAATTCTCAAGAACAAAGCCCCTCGCTGGCATGAACAGTTGCAGTGCTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAGCTGATAGCGGCGGAGGAATCTCCTCCTGCTCAGCCTGTCCAGCCAGACCATGACAAGGTCGTTCTTCAGTTTGGCAAGGTTGGCAAAGATATGTTTACCATGGATTATAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1284 48.44 MSFRSIVRDVRDGFGSFSRHSFEAGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPPELLRDVIKGLEASESTWPSRKHVVSCASVCRSWREMCQEIVQSPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYRLFLCLSPALHVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIYDTQPPYNSVQLSQPGRSRRLNSKKVSPKFPTGNYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSVDNSTEFSSARFSDIARLNEDQEEEQEEDESKEKIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPAQPVQPDHDKVVLQFGKVGKDMFTMDYRYPLSAFQAFALCLSSFDTKLACE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26257209 26259917 - BLOR04805 Blo12g00786 68047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00786 427 PANTHER TUBBY-RELATED 1 427 - -
Blo12g00786 427 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Blo12g00786 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Blo12g00786 427 ProSitePatterns Tub family signature 1. 354 367 IPR018066 -
Blo12g00786 427 Gene3D - 48 101 - -
Blo12g00786 427 Coils Coil 311 331 - -
Blo12g00786 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Blo12g00786 427 Gene3D Tubby Protein; Chain A 110 427 IPR025659 -
Blo12g00786 427 Pfam F-box domain 53 99 IPR001810 GO:0005515
Blo12g00786 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Blo12g00786 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Blo12g00786 427 PRINTS Tubby superfamily signature 336 353 IPR000007 -
Blo12g00786 427 PRINTS Tubby superfamily signature 354 370 IPR000007 -
Blo12g00786 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Blo12g00786 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Blo12g00786 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Blo12g00786 427 Pfam Tub family 114 422 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01728 Blo12g00786 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00865 Blo-Chr2:33067374 Blo12g00786 Blo-Chr12:26257209 0 dispersed
Blo10g00732 Blo-Chr10:22992816 Blo12g00786 Blo-Chr12:26257209 7.64E-120 dispersed
Blo12g00786 Blo-Chr12:26257209 Blo15g00775 Blo-Chr15:26557088 0 dispersed
Blo01g00087 Blo-Chr1:1170475 Blo12g00786 Blo-Chr12:26257209 1.04E-149 transposed
Blo01g01728 Blo-Chr1:57017987 Blo12g00786 Blo-Chr12:26257209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13046 PF01167 Tub 4.80E-115 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00786 K19600 - zju:107421669 731.095