Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00787 ATGGAGGGTGATTCTAATGTGTTGAAAGTATCCGATCAGGAGGTGGAGGCGGCGGCACCGGAAGGTGGGTCAAGTTCAGGCGAAGAAGATAAGGGTAGAGATGATGATGGTGACGGAAACTGTAGCGGAAATCGTTGGCCTCGAGAAGAAACATTGACTTTGTTGAAGATTCGCTCTGATATGGATTCAGTTTTTCGGGATTCCACTCTGAAAGGTCCACTGTGGGAAGATGTTTCAAGGTCGAAGCTAGAAGAGCTTGGGTACAGACGAAGTGCGAAGAAATGCAAAGAGAAATTCGAGAATGTATACAAGTATCACAAGAGGACTAGAGATGGAAGAAATGGGAAAAGATCAAACGCAAAATCCTACAAATTTTTCAATGAAATTGAAGCACTAGAGAATCTTCACCCTCCTCAACAATGTCTTCCCAAACTTCACCCACCTCTCACAGTTCTTCCTCCATGGACGACAATGAGCCAAGTTCATTTTCATCAATCCTTCACTCATCACTCTTCCGCCACCCCCACCAGCACATTACGAAAACCATTGAATTCAAATTTCCCAGCCCCTAAATCAAACCCTATCGACAATATTCCAGAAACCTCCGTATCCAAAAACGGTGATTTCGTTCTCTCGAGCTCGACTTCAACGTCGACTGCGTCGGACAAGGAGCTCGGGGGAGGGCGGAAGAGGAAAAGAAAGTGGAAGGGCTTCTTTGTGAGGATGACGAAGGAGGTTATGGCCAAACAAGAGGGTTTGCAGATGAAATTCTTGGAGGCATTGGAGAAAATTGAACACCAAAGAGTTGTCAGAGAAGAGAGTAGGAGAATTCAAGAAATGGCACGAATTAACAAAGAACATGAAATGTTAGTCCAAGAAATTTCCGCTGCAACAGCAAAAGATGCGGCCGTGGTTTCATTTTTGCAAAATATCATGTCTAACCAGCCGAATCAGACCCAATCAAAAGGCTATCCTCTTTCGATGCTGCCATTGTTACAATCTCGGCCTCAGCCTGCAATTCCACCACCTAATTTAGAGCTCAAAATAATAGAAAATGGTGGAAATTCAAGTCAAATATCCCGCTCAAGATGGCCGAAAGGAGAAGTTCAAGCTCTGATAAGTCTTAGAGCAGATCTTGATATGAAATACCAAGAAAATATAGCTAAAGGGCCATTGTGGGAGGACATTTCAGCAGCCATGAAAAAGCTCGGATACAATCGAAGCTCTAAGAGATGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAAAAAGTGAAGGAAAGCAACAAGAAAAGGAGTGAAGATTCAAAGACTTGCCCATATTTTGAGCAGCTTGATGCTATATACAAAGAGAAAAAGAAAAAGGAAAGCTCATTCAATCCTCAAATGTTGCCCCTGATGGTCCAACCAGAACAACAATGGCCTCCGCCCGAGCAAAAACAAGCTGTGTCCATGCATATGATTGATCTTAACATTTATGATAGCAAGCACATCTAG 1500 42.93 MEGDSNVLKVSDQEVEAAAPEGGSSSGEEDKGRDDDGDGNCSGNRWPREETLTLLKIRSDMDSVFRDSTLKGPLWEDVSRSKLEELGYRRSAKKCKEKFENVYKYHKRTRDGRNGKRSNAKSYKFFNEIEALENLHPPQQCLPKLHPPLTVLPPWTTMSQVHFHQSFTHHSSATPTSTLRKPLNSNFPAPKSNPIDNIPETSVSKNGDFVLSSSTSTSTASDKELGGGRKRKRKWKGFFVRMTKEVMAKQEGLQMKFLEALEKIEHQRVVREESRRIQEMARINKEHEMLVQEISAATAKDAAVVSFLQNIMSNQPNQTQSKGYPLSMLPLLQSRPQPAIPPPNLELKIIENGGNSSQISRSRWPKGEVQALISLRADLDMKYQENIAKGPLWEDISAAMKKLGYNRSSKRCKEKWENINKYFKKVKESNKKRSEDSKTCPYFEQLDAIYKEKKKKESSFNPQMLPLMVQPEQQWPPPEQKQAVSMHMIDLNIYDSKHI 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26264497 26267697 + BLOR04806 Blo12g00787 68048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00787 499 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 16 487 - -
Blo12g00787 499 Gene3D - 364 425 - -
Blo12g00787 499 Gene3D - 46 108 - -
Blo12g00787 499 MobiDBLite consensus disorder prediction 26 43 - -
Blo12g00787 499 PANTHER - 16 487 - -
Blo12g00787 499 SMART sant 360 422 IPR001005 -
Blo12g00787 499 SMART sant 42 105 IPR001005 -
Blo12g00787 499 Pfam Myb/SANT-like DNA-binding domain 361 449 IPR044822 -
Blo12g00787 499 Pfam Myb/SANT-like DNA-binding domain 44 132 IPR044822 -
Blo12g00787 499 MobiDBLite consensus disorder prediction 168 229 - -
Blo12g00787 499 ProSiteProfiles Myb-like domain profile. 44 103 IPR001005 -
Blo12g00787 499 Coils Coil 280 300 - -
Blo12g00787 499 MobiDBLite consensus disorder prediction 1 46 - -
Blo12g00787 499 CDD GT1 44 110 - -
Blo12g00787 499 ProSiteProfiles Myb-like domain profile. 356 420 IPR001005 -
Blo12g00787 499 CDD GT1 362 427 - -
Blo12g00787 499 MobiDBLite consensus disorder prediction 168 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01727 Blo-Chr1:57005910 Blo12g00787 Blo-Chr12:26264497 0 dispersed
Blo11g00465 Blo-Chr11:4188452 Blo12g00787 Blo-Chr12:26264497 8.81E-16 dispersed
Blo12g00500 Blo-Chr12:22857666 Blo12g00787 Blo-Chr12:26264497 4.28E-20 dispersed
Blo12g00787 Blo-Chr12:26264497 Blo10g00299 Blo-Chr10:4434443 4.91E-15 dispersed
Blo12g00787 Blo-Chr12:26264497 Blo12g00788 Blo-Chr12:26285447 4.39E-147 tandem
Blo04g00970 Blo-Chr4:12136378 Blo12g00787 Blo-Chr12:26264497 5.73E-126 transposed
Blo06g01185 Blo-Chr6:35305963 Blo12g00787 Blo-Chr12:26264497 8.17E-06 transposed
Blo07g01138 Blo-Chr7:31245467 Blo12g00787 Blo-Chr12:26264497 2.51E-07 transposed
Blo11g00151 Blo-Chr11:1204221 Blo12g00787 Blo-Chr12:26264497 2.60E-24 transposed
Blo01g01726 Blo-Chr1:56990659 Blo12g00787 Blo-Chr12:26264497 1.31E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13047 PF13837 Myb_DNA-bind_4 4.10E-22 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00787 - - tcc:18592609 476.092