Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00798 ATGGGAAAATCCGGTGGAGAAAAGGCTACTTCTAAAAGCACCAATAAACATCAGGCAATCACCGCAACTGTTACAAAAGGTTGGGTCCTAGCATTACCAACAAAGGACTGTAATCAAGGTGATAAGAATCATACATATCCAATTTCAACTCTCGAGGATGGCCAAGTTGAATCATCCTGCTTATGTTGCTCGGCCAAAGAAAGTTGCAAAACTGTCCGGACCAGAACAAAATTAATGAACGTTTTGGTAGAAAGAGGGAAATCTCAGGAAGTGCAGTCTATTTTTGACGGTTTAATTGAAGGAGGCCATAGACCATCACTGGTGACATATACTATCCTTTTGGCTGCCTTGACCAATCAGAAACGCTTCAAGTCCATACATTCGGTATTGTCCATGCTGGAAGAAAATGGCATGAAACCAGACTCTGTATTTTACAATGCTGTTATTAATGCTTTCTCTGAAGCTGGTAATGTTGATGAAGCCATGGTGACCTTTCAAAAGATGAAGGAGAGTGGACTAAAACCTACTACAAGCACTTTTAACACTTTAATAAAAGGTTTTGGTATTTCTGGTCGAGCTGAAGAAACTCTAAAGCTACTAGAGGTGATGTCTCAAGAGGAAAATACAAAACCAAATCTCAGAACTTACAACGCACTAGTAAGAGCATGGTGTAAGAACAACAATATTTCCGAGGCATGGAATGTGGTTTATATGATGGCTAGTCTTGGAATGAAGCCAGATGCCGTAACTTACAACACAATAGTAACAGCCTATGCTCAGAAAGGGGAAACAGAACAGGCTGAAAGGATCATTTTAGAGATGCAAAAAAAGGGTTTGGAGCCCAATGAGAGAACTTGTAGTATCATAATTAGTGGATATTGTAAAGAAGTTAAACCTAAGGAGGCTATTAGGTTCGTATACCGGATGAAGGATTTCGTTGTACGGCCTAATCTGGTTGTTTTTAACTCTCTCATCAAAGGCTTTTTGGAAACTATGGACCGAGAAGGGGTTGACGAGGTTTTGGCTATGATGAAAGAATTTGGAGTCAGACCGGATGTAATCACATTTAGTACCATTATGAATTCATGGAGCAAAGCTGGCTTCATGGTGAAATGCAGGGAAATATTTAATGAAATGACTGAAGTCGGAATTGAACCAGATGCACATGCATATAGCATTCTTGCTAAAGGGTACGTGTGCTCACAAGAACCCGAAAAGGCTGAAGAATTATTGAGCACTATCATTAAATCTGGAATTCGCCCAAACGTAGTGTTTTTTACAACCATTATAAGTGGTTGGTGTAGTGCTGGAAATATGGATTCTGCCATCAGGGTATTCGACAAAATGTGCGAATACAAGGTTTATCCTAACTTGAAGACTTTTGAGACATTGATATGGGGGTATGGAGAAGCAAAGCAGCCATGGAGATCAGAAGAAATTCTCGAAGTTATGGAAGATTTTAATGTTCAGCCAGAGAAATCCACCATCTTGTTAGTTGCAGAAGCTTGGCGAGGAGTGGGAATGACGAAAGAAGCAAAGAGAATACTCGATAGTCTGACGAGTAGAGAGACAAAGCATCAGACCGAGAAAGAAGAAGATAAACAAATACAAAGCTTAAACAAAATGTATCAAAAGCGACCCGGAAATTCATCTTCGTCTGGTCTTTTTCAGATACCATCTTCGACGACCAAACGAAACAGTATGGCGATGAGGGATTCGGATTTTTCTTCGGAGAGTTCATCAGTTGCCCCAAAATCTCTTTATCTATCTCACGGTTGCAAATTTGGAGAAAGGTTGCCAATTGTGTGTAGGAGGCAGTCTCAAGGACAGATGAACAAGGCTACCATTCTCGACGACGCAGTTAACTACATTCAGGAACTACTGAAAACGGTTGACACTCTTAAGGCTCAGCTTCTTGAAATGGAAGAATCATCCGAATATAGAGCTAACCCGGGCGAAGCTGACGCGGACGACGAGACGAAATGTGGGATTGAGACGGAGGTGGAGGTTTCTTCAATCGGAGAGAATAAAGTGTGGGTAAAGATGGTGTTTAAGAAAAGAAGGAGGAGCTTAATTAAGCTAATGGAAGCTCTGGGAAGTTTTGGGTTCAGAATGAACGATGCCAGCGTCGCCACCATCAGAGGAGCGGTTCTCGTATCGGCCATTATTGAGGTGAGCATTCATTCGAACCCATTCATCGATGCAGATTCTGCCTTAGCAATCCGGCAAGTGTTTTTGGTTTTCGCCATTGAAATGAGTAAAGGAGGTTTCTTTAATGGGTTCAGCGTTTCTATGGGGAGCCAGTTTGGGTGGAGCAAACAAAGGAATTACTGA 2334 41.52 MGKSGGEKATSKSTNKHQAITATVTKGWVLALPTKDCNQGDKNHTYPISTLEDGQVESSCLCCSAKESCKTVRTRTKLMNVLVERGKSQEVQSIFDGLIEGGHRPSLVTYTILLAALTNQKRFKSIHSVLSMLEENGMKPDSVFYNAVINAFSEAGNVDEAMVTFQKMKESGLKPTTSTFNTLIKGFGISGRAEETLKLLEVMSQEENTKPNLRTYNALVRAWCKNNNISEAWNVVYMMASLGMKPDAVTYNTIVTAYAQKGETEQAERIILEMQKKGLEPNERTCSIIISGYCKEVKPKEAIRFVYRMKDFVVRPNLVVFNSLIKGFLETMDREGVDEVLAMMKEFGVRPDVITFSTIMNSWSKAGFMVKCREIFNEMTEVGIEPDAHAYSILAKGYVCSQEPEKAEELLSTIIKSGIRPNVVFFTTIISGWCSAGNMDSAIRVFDKMCEYKVYPNLKTFETLIWGYGEAKQPWRSEEILEVMEDFNVQPEKSTILLVAEAWRGVGMTKEAKRILDSLTSRETKHQTEKEEDKQIQSLNKMYQKRPGNSSSSGLFQIPSSTTKRNSMAMRDSDFSSESSSVAPKSLYLSHGCKFGERLPIVCRRQSQGQMNKATILDDAVNYIQELLKTVDTLKAQLLEMEESSEYRANPGEADADDETKCGIETEVEVSSIGENKVWVKMVFKKRRRSLIKLMEALGSFGFRMNDASVATIRGAVLVSAIIEVSIHSNPFIDADSALAIRQVFLVFAIEMSKGGFFNGFSVSMGSQFGWSKQRNY 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26377966 26382730 + BLOR04817 Blo12g00798 68059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00798 777 PANTHER OS01G0228400 PROTEIN 1 613 - -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Blo12g00798 777 MobiDBLite consensus disorder prediction 544 581 - -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Blo12g00798 777 Pfam PPR repeat 418 449 IPR002885 -
Blo12g00798 777 Pfam PPR repeat 210 238 IPR002885 -
Blo12g00798 777 SUPERFAMILY HCP-like 150 482 - -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 108 142 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 319 353 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 426 457 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Blo12g00798 777 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Blo12g00798 777 Gene3D - 584 647 IPR036638 GO:0046983
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Blo12g00798 777 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 608 643 IPR036638 GO:0046983
Blo12g00798 777 Coils Coil 617 644 - -
Blo12g00798 777 Gene3D Tetratricopeptide repeat domain 298 401 IPR011990 GO:0005515
Blo12g00798 777 Gene3D Tetratricopeptide repeat domain 192 297 IPR011990 GO:0005515
Blo12g00798 777 Gene3D Tetratricopeptide repeat domain 57 191 IPR011990 GO:0005515
Blo12g00798 777 Pfam PPR repeat family 351 398 IPR002885 -
Blo12g00798 777 Pfam PPR repeat family 246 295 IPR002885 -
Blo12g00798 777 Pfam PPR repeat family 140 187 IPR002885 -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Blo12g00798 777 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 613 - -
Blo12g00798 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Blo12g00798 777 Gene3D Tetratricopeptide repeat domain 402 574 IPR011990 GO:0005515
Blo12g00798 777 Pfam PPR repeat 319 349 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00798 K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1 - qsu:111987770 862.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00798 Blo-Chr12:26377966 Blo12g01047 Blo-Chr12:28301641 3.12E-27 dispersed
Blo12g00798 Blo-Chr12:26377966 Blo01g01128 Blo-Chr1:40657966 9.99E-16 transposed
Blo12g00798 Blo-Chr12:26377966 Blo06g00055 Blo-Chr6:1477594 3.68E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00798 Blo_Chr12 FPKM 6.982845 8.996151 9.616781 8.958929 7.823789 7.71368 8.963582 12.641914 11.033134 12.008397