Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00807 ATGGTCTACTCTTACTCAAAATCAAAATCTTTTCTTCTGTTTAACTTGTTTGTTCTTCTTCTCAGTTTTGACTGTATTTTTGCTTCCCCCACCGACTTCATCTCTGCATGTTTGTCTTTTCATGGTGTTCAAAATTTCACCACGTTACCCAAGGGTAAAAATGACTCCACCACAGCTTATTATCGTCTTCTTAAATTTTCCATACAAAATCTCCGTTTCGCAGAGCCTAGGGTTCCGAAGCCCACTGCAATTATACTGCCCGAAAGTGTGGAGGAGCTGGCTAGCGCAGTGTCATGCTCTACCGAAGGCTCGTTCGAGATCAGAGTGAGATCGGGTGGGCATAGCTACGAAGGAACTTCTTCCGTGGCCATCGATGGAGCTTCGTTCGTCATTATTGATATGATGAATTTAAACAGGGTTTGGAACGTTGATCTTAAAGCTGAAACTGCATGGGTAGAGGGAGGAGCCACGTTAGGTGAAGTTTACTACGAAATCTCAAAGGTCAGTAAAACCTATGGATTCTCGGCCGGGTCGTGTCCGACCGTCGGAGTCGGCGGGCACATCGGTGGTGGCGGGTTCGGGTTGTTGTCTAGAAAGTATGGGCTGGCTGCTGATAACGTAGTGGATGCGCTAGTCGTTGATTATATGGGAAAATTGTTGGACCGAGAGGGAATGGGAGAGGACTTGTTTTGGGCCATTAGAGGCGGCGGCGGCGGCGTCTGGGGGGTGGTGTACGCTTGGAAAATACATTTGGTGCCACTTCCGCAAACTGTCACAGCCTTTGTAGTGTCGAGAGGGGCTGGCAACAAGAGCCACGTGGCAGAGCTGGTGAACCAATGGCAGCACGTAGCACCCACCTTAGAATCCGAGTTCTACATCTCGTGTTTTGTCGGAGCAGCGCTGCCGGAGGCGGTGGAGACTCCTCGCATGTCCGCGACGTTCAAAGGGCTGTATCTCGGCCCAAGAAGAAAGACACTCTCCATCGTAAACGATGTTTTCCCGGAGCTAGGAATTTCAGAGGAAGACTGCATCGAAATGAATTGGATAGAATCAGTTGTCTTCTTCTCCGGCCTAAGCATCGGGAGTTCCGTTTCGGAATTGAAAAACCGATACCTGAAAGATAAGAACTATTTCAAGGCGAAATCAGATTACGTGAGGACTCCAATCCCCGCAGGCGGCATAAAAAACGCCATAAAAATCCTCGAAAAGGAGGCGAAAGGGTACATCATCTTAGACCCTTACGGCGGAAAAATGGAAAACATAAGCAGCGATGCCATAGCGTTTCCTCACAGAAGGGGAAACCTATTCACAATCCAGTACTTGGTCGAATGGCACTGCATAAACAAGGACAAACAAAACGATTACTTAGAATGGATAAGAGAATTTCATCACAAAATGACGCCGTTCGTGTCGTCGTCTCCAAGGGCGGCGTATATAAACTACATGGACTTTGATATGGGAGTGATGGAACGGCCAAACCAGATAAAGGGTGGTCCAATGGCGGATGCTGCAGAGGTAGCGAGAGCTTGGGGAGAGAAGTACTTCTTGGAAAACTACGACAGATTGGTGAGGGTGAAGACGGACGTTGATCCTAACAACGTGTTTAACAATCCTCAAGGAATTCCTCCCAACCCCGTTGAACTCGCCGAGAGTTAA 1656 48.19 MVYSYSKSKSFLLFNLFVLLLSFDCIFASPTDFISACLSFHGVQNFTTLPKGKNDSTTAYYRLLKFSIQNLRFAEPRVPKPTAIILPESVEELASAVSCSTEGSFEIRVRSGGHSYEGTSSVAIDGASFVIIDMMNLNRVWNVDLKAETAWVEGGATLGEVYYEISKVSKTYGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALVVDYMGKLLDREGMGEDLFWAIRGGGGGVWGVVYAWKIHLVPLPQTVTAFVVSRGAGNKSHVAELVNQWQHVAPTLESEFYISCFVGAALPEAVETPRMSATFKGLYLGPRRKTLSIVNDVFPELGISEEDCIEMNWIESVVFFSGLSIGSSVSELKNRYLKDKNYFKAKSDYVRTPIPAGGIKNAIKILEKEAKGYIILDPYGGKMENISSDAIAFPHRRGNLFTIQYLVEWHCINKDKQNDYLEWIREFHHKMTPFVSSSPRAAYINYMDFDMGVMERPNQIKGGPMADAAEVARAWGEKYFLENYDRLVRVKTDVDPNNVFNNPQGIPPNPVELAES 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26438009 26439664 - BLOR04826 Blo12g00807 68068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00807 551 Pfam Berberine and berberine like 477 542 IPR012951 GO:0016491|GO:0050660
Blo12g00807 551 Pfam FAD binding domain 81 220 IPR006094 GO:0050660
Blo12g00807 551 PANTHER OS08G0158400 PROTEIN 23 547 - -
Blo12g00807 551 SUPERFAMILY FAD-binding/transporter-associated domain-like 32 255 IPR036318 GO:0050660
Blo12g00807 551 Gene3D - 257 473 - -
Blo12g00807 551 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 81 114 IPR006093 GO:0016491
Blo12g00807 551 ProSiteProfiles PCMH-type FAD-binding domain profile. 77 254 IPR016166 GO:0071949
Blo12g00807 551 Gene3D - 142 543 IPR016169 -
Blo12g00807 551 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 23 547 - -
Blo12g00807 551 Gene3D - 33 137 IPR016167 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00807 - - - mdm:114822985 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00807 Blo-Chr12:26438009 Blo11g00172 Blo-Chr11:1336433 7.77E-145 dispersed
Blo12g00807 Blo-Chr12:26438009 Blo01g00952 Blo-Chr1:24117590 2.15E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1780 . Blo12g00807 . Bda03g00367 . Bpe04g00329 Bma04g00344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016642 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00807 Blo_Chr12 FPKM 3.941176 3.845884 7.271396 5.792715 10.942969 11.59272 11.846963 3.878586 4.203354 4.028805