Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00809 ATGTGGGTCTTGATCACTGTTCCTGCCCAGAATCGACTCCTAGAGGCCGCTGCTATGGTGCTTATGATCTTGCAATGCTCGTCTGTGACGGTGCAGGCGCAGGTTCCGGCCATGTTTGTGTTCGGAGACTCTTTGGTTGACGTTGGCAACAATAACTACCTGAGGTCAATGGCCAGAGCTAACTACGCTCCTTATGGCTATGATTTCAGTAGTGGTCCTACCGGAAGATTTTCCAACGGAAAAACCTTGGTCGACATGTTTGCTGACTTGTTGGGTCTTCCCTATCCTCCGCCATTTGCAGATCCCGACACAGTTGGATCCAAAATACTTAACGGTGTTAATTATGCTTCTGGTGCTGCAGGAATCCTCGACGAAACTGGCCAACATTATGGACAGAGATTTAGCCTGAGCCAACAAGTGGTTAATTTCGAGACGACGCTGAACCAGCTAAGGAGTATGATGAGTGGCGGAAATCTGACCCAGTACCTTGCCAAATCTATTGTCGTTTCGGTGTTTGGAAGCAATGACTATATAAACAATTATCTCCTTCCTACTCTCTACACTTCCAGCCTCACCTACTCCCCTCCTCAGTTTGCCAATCTTCTTCTCAACCACTATGCCCGTCAACTTCTGGCATTGCACAGCGTGGGATTGAGGAAATTCATGGTGGCTGGAGTGGGACCATTGGGTTGCATTCCGAACCAGAGGGCTACCGGCGTAGCTCCGGAAGGAAGGTGCCTGGATTCCGTGAATCAAATCCTTGGGACATTGAACGAAGGCCTCCGATCGCTCGTCGACCAGCTTAACACAAACCACCCAGGGTCCATCTTCGTTTATGCGAACACCTACGGTGCTGTCGGCGACATCTTGAACAACCCCACCACCTACGGGTTCAGCGTGGTGAACAGGGGATGCTGTGGAATCGGGAGCAACCAAGGGGAAATAACGTGTCTTCCCTGCCAAGTTCCATGCGCCGACCGGAACCAGTTTGTGTTTTGGGACGCCTTTCATCCAACCCAAGCTGCCACCGCCATTCTTGCTTGGAGGGCATTCAGGGGCCCACCTTCTGATTCTTATCCAATCAACATCCAACAAATGGCTCTCCTCTGA 1110 50.81 MWVLITVPAQNRLLEAAAMVLMILQCSSVTVQAQVPAMFVFGDSLVDVGNNNYLRSMARANYAPYGYDFSSGPTGRFSNGKTLVDMFADLLGLPYPPPFADPDTVGSKILNGVNYASGAAGILDETGQHYGQRFSLSQQVVNFETTLNQLRSMMSGGNLTQYLAKSIVVSVFGSNDYINNYLLPTLYTSSLTYSPPQFANLLLNHYARQLLALHSVGLRKFMVAGVGPLGCIPNQRATGVAPEGRCLDSVNQILGTLNEGLRSLVDQLNTNHPGSIFVYANTYGAVGDILNNPTTYGFSVVNRGCCGIGSNQGEITCLPCQVPCADRNQFVFWDAFHPTQAATAILAWRAFRGPPSDSYPINIQQMALL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26460626 26462089 + BLOR04828 Blo12g00809 68070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00809 369 Gene3D SGNH hydrolase 24 353 IPR036514 -
Blo12g00809 369 Pfam GDSL-like Lipase/Acylhydrolase 39 347 IPR001087 GO:0016788
Blo12g00809 369 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 17 368 - -
Blo12g00809 369 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 17 368 - -
Blo12g00809 369 CDD SGNH_plant_lipase_like 36 354 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00809 - - - nnu:104594025 537.724
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01690 Blo12g00809 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01753 Blo-Chr1:57307896 Blo12g00809 Blo-Chr12:26460626 8.04E-75 dispersed
Blo07g00140 Blo-Chr7:1889369 Blo12g00809 Blo-Chr12:26460626 1.48E-83 dispersed
Blo12g00766 Blo-Chr12:26014996 Blo12g00809 Blo-Chr12:26460626 9.58E-70 dispersed
Blo12g00809 Blo-Chr12:26460626 Blo12g00832 Blo-Chr12:26632195 3.56E-120 dispersed
Blo01g01690 Blo-Chr1:56606697 Blo12g00809 Blo-Chr12:26460626 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1760 Blo01g01690 Blo12g00809 . Bda03g00365 Bpe02g00252 . Bma04g00342 Bma01g02456 . . . Cma09g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00809 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.524761 0.904429 0.41188