Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00810 ATGACTCCATCTAATTTGGCAGGGCAGTTTGGTGATACGACCTACACCAAGGTTTTTGTAGGAGGGTTGGCTTGGGAAACCCAGAAAGAGACGATGAAGAAGTATTTTGAACAGTTTGGTGACATCTTGGAGGCTGTTGTCATTACTGATAAAGCCACTGGAAGATCCAAGGGCTATGGATTTGTGACTTTTCGAGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGATGGAAGGAGGGCCAACTGCAATCTGGCTTCTTTGGGTGTTCAGAGATCCAAGCCTTCAACACCAAAACATGGAAAAAATGGAACAGGTGGAGGCAGAAACTTTAGGGTAATGGGCTCTTTCCAGACAGGGTTTGGTGGGAGTGCTGGAGCAGCTTTTCCAGCGACCTTCCCTCATTATGCCTTTCAACAAGGGATACCTTACAATGTTTATGGGTATTCTTCGTACTCGCCAGATTACACATACCCTACGAGCTATTACAATGTTTATGGAGGTGCAACTACGCAATATCCAGTGTACGGGACTGGGGTGGGGGGGATGATGACTACCGGAGCGACAGCGGCAGCCGCCGCCGCCGCCGCCTTTTACCCTTTTCTCCAGTTTGGAGAAGGAAGTGGTGGGGCCACGGGCTACTCTTCTGGTCAAGGCTATGGCTTCCAATATCCTCACCATCTTCTTCAATATTCACCGATTACTTCAAATGCTAACACTTATCCTCATCACTATGCTCCGCCCATGTCTCTCGCTCCTACTCCTGCTTTGCAATCAGGTTTCTTCTCTCTTCCATTCTCCTCCAAATTTCATGTTCTGAGTGTGTTAAAAGAGGTGTTCGAAAGTGTGAAACTTAAGGATGGTGGTGATATTTGTGATAGTTTTAGGTTCCAACCTTTCTCATCACGGGCTGACTTATCAACTCCTAGTCAGAAATTTACTCCTCAAGCTCCCGGGGATAAGACTGCAAGAATATTTGCACCTTATTCTGTTTATAAGGGCAAAGCAGCTCTCTCTCTGAATCCTATTCTCCCTACTTTCACAAAATTGGAGTCGGGAAATCAGGTTATGGATCGGCGTGGTTCAATGATGTTGCAGTTCTTACCTGCTATTGGTGAACGTAAGTATGACTGGGAGAAGAAGCAGTTGTTTGCGTTGTCACCGACAGAAGTTGGTACTTTATTGAATTTGGGTCCCAAAGATTCATGTGAATTCTTTCACGATCCTTCAATGTTATCAAGTAATGCGGGTCAAGTGAAGAAAAGCTTATCAATTAAGTCAATTGGAGAGGGTACCGGCTACTTCGTCTCTTTGAGTGTTGTGAACAATCTTCTAAAAACCAAAGAAAATTTTACTGTCCCTGTTACTGCCAGTGAATTTGCTGTAATGAAGACAGCATGCAGTCTCGTAAGAAGTCACTTTTGGACTTTTGACGTTGCAAAGCAGCTTCTTAGGATATGTAAAACTTATCTGGCCTTTTGTTTGTTTAACAATCTTGATGTGAAAGGCGAAGAACCAGTCCGATTATGCACTGCCATATATATTCACTGCCATGGCCTCCTGTTGACATTCTCTTGTAACTACCGATACACCTGCTCAAACAGATCAGATTTTGAAGAAAACAAGACAATGAACACGAACGTAGACACTTGGCAAATCATTCACATTTCTGAAAATCCTCGTATCTCCCCTGACCAACAGCCAACTGTGAACGTTTTCGCCGCTGATGTTGAGCCCAAGCTAGTGAATGCTCTTGTAAGGCGCTTAAATCAGATCGCACCTTTGGAAAGTCTACGACACGTGAAGAGAGTTCAGAAGAAATGTATTGATGGAACAACTCAGTTAGCTGTGATCTTATGTCAAGCTAATGAAAATGATTCTCACCCGGATAGCATACCTCACAACATTCGAGAGCTTATGAATTGCCATCAGTTGAGTGCTTTTATTACAAAAGTTTGCAAAGAAGCAGCGTCATCAAAAGAACAGTGGGAAGAACAATGCAAGCTTTGGCCAACATCCTATCATCCACCAACCTACAAGATTGATGGTGTTGCTGGATTTAGTGAAGAGGACCGACAATCTGTCATTGGCTTTATGAAGTTTACTGTTGAGTTGGCAAAATATGGTGATGATTTGGTAGTCAATGCTGCAGTAATAGTGGATCCTGCAGTTAAGCAGATCATAGCAAGTGCATGTGATGAAACTTATACTCAAAATACATCTGGAAGGGAACCGTGCTTCAATAACTGCTCCTCCCGTTTCGATAACTGCAGTGGAAAGAGAGACGATGAAGAGTTGCCATCAAATGGTTGTCTCGAAGAACTGAATCGGAATCGTAGTGGTGTATCTTGTCTGTATCCTTGGCAGTGGGATAAACAACCATCACACATGGACAATTGGCATCCCTTGAGACACGCTGCAATGGTTGCTATTGAATCGTCTGCTGCCAGGGACAGAAAACTATTCCCCGGTTACGGGAACATTGGAGAAAACTCAGTTGAATTAAGCCAGGCGGAGGCCTCGTCCGTCAGTTCTTCCTCAAAACGACAGAAGATCGATCTGAAAAACGGTGGGAAGAGTAGTTCTCCTGGTGATGAAAGTGTTTCTGCCGTTGCGCCCAGGCCATACCTGTGCACTGGCTATGACATGTACTTGGTGTGCAATGGCGCTTGTCCACCAGAGAATGAGGAGAATATTTTATGCCTATCCGAACCCAAATGCTGGTGCGCTTGGCAGTGTTCACAGACTGCAGGGAGAAAAGAGCTTGAACCATCATTATGCTGTTTTCAGGGTGCTACTGCCCGAGCCTTAGGCATCATCCAACCTTTTGCTTTGAAAAGGGTGCAAATGTGGATTATGCAGACTGCTCGTGGAGGATTTGTTATCGGTTTCTTGATTTTACTATTTCAGACTGAGATAACAGTCTCAAAGTTTCAAAACCGTGTCCAAGTATATGGAGTAGAAGGAGGGCTTCCTGTCTTTTTTGATATTGATGGACGAGGCAGTGAGATATTCCCAACAGTATATTCCCTCTGGAAAGTCCCTGAACTATTGCCCGCCTTTTTTCTGAAAGGGGGGGAAGTCTCCCGCTATATCATTGGTGGGGCAGATCTTATGTTCCCAGGCATCAGTGTACCTGTCGAAGGTCTACCTTCTTTTTTGGCTGGGGAAACATGGGCCGTAAAGGTTCCTGGAAATTTGGCTGCTATCGCTGTTGGAACAACCACTATGAGCAGTGAGGAAGCATTAAAGGCAGGTTTAAGAGGAAAGGCTTTGCGAATTGTGCACTATTATGGGGATCTACTTTGGGAGTCTGCTGAGGGCCATTATGTGCCTAATGCGGGCTTTTTAGAGGATGTTGTGTTTGAAGATCCTGCCTGTACGGCTATCTCTCAATTTTCTCATTCACTTGAAGGTGCTGTCGATAGTTCTGATAATCAACAAGATGATGATGATGAAGTAGAGGAACCCGAAAATGATAATAATTTGGAGCCTAGTTCTTCAAAAGCATCGGTTCCTAAAGATATTGCTGAAGATATTATTTTAGATGTTGATTCTTTGAAGGTCACAGACGTTTTACCTGAAGAACAAAGTGATAATCACCATCTTTCTGTGGAGGATGTGGATACCCTTTTGGACAAATGCCTTTTGCAAGCTTTACATACAACAGTTAACGACAAAGATATTCCTTTGGCAGGAAGCACTCTCTGGTCAAATCATGTACTACCTTGCCGACCTTCTGGAGTCACTCTTGATATAAAGAAATCATCTTATAAGAAATTGTCAAAGTGGTTACAAGCAAAATCTTCTATTGGACTGGTGTAG 3840 43.93 MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGKNGTGGGRNFRVMGSFQTGFGGSAGAAFPATFPHYAFQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATTQYPVYGTGVGGMMTTGATAAAAAAAAFYPFLQFGEGSGGATGYSSGQGYGFQYPHHLLQYSPITSNANTYPHHYAPPMSLAPTPALQSGFFSLPFSSKFHVLSVLKEVFESVKLKDGGDICDSFRFQPFSSRADLSTPSQKFTPQAPGDKTARIFAPYSVYKGKAALSLNPILPTFTKLESGNQVMDRRGSMMLQFLPAIGERKYDWEKKQLFALSPTEVGTLLNLGPKDSCEFFHDPSMLSSNAGQVKKSLSIKSIGEGTGYFVSLSVVNNLLKTKENFTVPVTASEFAVMKTACSLVRSHFWTFDVAKQLLRICKTYLAFCLFNNLDVKGEEPVRLCTAIYIHCHGLLLTFSCNYRYTCSNRSDFEENKTMNTNVDTWQIIHISENPRISPDQQPTVNVFAADVEPKLVNALVRRLNQIAPLESLRHVKRVQKKCIDGTTQLAVILCQANENDSHPDSIPHNIRELMNCHQLSAFITKVCKEAASSKEQWEEQCKLWPTSYHPPTYKIDGVAGFSEEDRQSVIGFMKFTVELAKYGDDLVVNAAVIVDPAVKQIIASACDETYTQNTSGREPCFNNCSSRFDNCSGKRDDEELPSNGCLEELNRNRSGVSCLYPWQWDKQPSHMDNWHPLRHAAMVAIESSAARDRKLFPGYGNIGENSVELSQAEASSVSSSSKRQKIDLKNGGKSSSPGDESVSAVAPRPYLCTGYDMYLVCNGACPPENEENILCLSEPKCWCAWQCSQTAGRKELEPSLCCFQGATARALGIIQPFALKRVQMWIMQTARGGFVIGFLILLFQTEITVSKFQNRVQVYGVEGGLPVFFDIDGRGSEIFPTVYSLWKVPELLPAFFLKGGEVSRYIIGGADLMFPGISVPVEGLPSFLAGETWAVKVPGNLAAIAVGTTTMSSEEALKAGLRGKALRIVHYYGDLLWESAEGHYVPNAGFLEDVVFEDPACTAISQFSHSLEGAVDSSDNQQDDDDEVEEPENDNNLEPSSSKASVPKDIAEDIILDVDSLKVTDVLPEEQSDNHHLSVEDVDTLLDKCLLQALHTTVNDKDIPLAGSTLWSNHVLPCRPSGVTLDIKKSSYKKLSKWLQAKSSIGLV 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26465242 26486238 + BLOR04829 Blo12g00810 68071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00810 1279 Gene3D Transcriptional Coactivator Pc4; Chain A 322 489 IPR009044 GO:0003677|GO:0006355
Blo12g00810 1279 ProSiteProfiles PUA domain profile. 1023 1104 - -
Blo12g00810 1279 Gene3D - 3 115 IPR012677 -
Blo12g00810 1279 MobiDBLite consensus disorder prediction 844 872 - -
Blo12g00810 1279 MobiDBLite consensus disorder prediction 844 875 - -
Blo12g00810 1279 SUPERFAMILY ssDNA-binding transcriptional regulator domain 329 478 IPR009044 GO:0003677|GO:0006355
Blo12g00810 1279 PANTHER BOULE-RELATED 1 265 IPR037366 GO:0003729
Blo12g00810 1279 MobiDBLite consensus disorder prediction 1149 1165 - -
Blo12g00810 1279 CDD RRM_RBM24_RBM38_like 16 91 - -
Blo12g00810 1279 SMART rrm1_1 17 89 IPR000504 GO:0003723
Blo12g00810 1279 Pfam Whirly transcription factor 336 470 IPR013742 GO:0003697|GO:0006355|GO:0006952
Blo12g00810 1279 PANTHER OS01G0876800 PROTEIN 1 265 - -
Blo12g00810 1279 Gene3D - 970 1116 - -
Blo12g00810 1279 Pfam Pre-PUA-like domain 976 1020 IPR041366 -
Blo12g00810 1279 SUPERFAMILY RNA-binding domain, RBD 15 120 IPR035979 GO:0003676
Blo12g00810 1279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Blo12g00810 1279 MobiDBLite consensus disorder prediction 1143 1176 - -
Blo12g00810 1279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Blo12g00810 1279 SUPERFAMILY PUA domain-like 1033 1109 IPR015947 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01688 Blo12g00810 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00252 Blo-Chr1:3249882 Blo12g00810 Blo-Chr12:26465242 1.12E-48 dispersed
Blo04g00307 Blo-Chr4:2409645 Blo12g00810 Blo-Chr12:26465242 1.15E-41 dispersed
Blo12g00207 Blo-Chr12:13356202 Blo12g00810 Blo-Chr12:26465242 4.55E-51 dispersed
Blo12g00810 Blo-Chr12:26465242 Blo16g01129 Blo-Chr16:39821002 5.30E-40 dispersed
Blo08g00657 Blo-Chr8:26185754 Blo12g00810 Blo-Chr12:26465242 6.34E-51 transposed
Blo11g00031 Blo-Chr11:252805 Blo12g00810 Blo-Chr12:26465242 1.54E-46 transposed
Blo11g00521 Blo-Chr11:4801984 Blo12g00810 Blo-Chr12:26465242 6.18E-10 transposed
Blo17g00909 Blo-Chr17:29897934 Blo12g00810 Blo-Chr12:26465242 5.20E-50 transposed
Blo18g00730 Blo-Chr18:19540387 Blo12g00810 Blo-Chr12:26465242 5.17E-54 transposed
Blo01g01688 Blo-Chr1:56599331 Blo12g00810 Blo-Chr12:26465242 3.57E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13052 PF08536 Whirly 3.80E-55 CL0609 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00810 K15027 - qsu:112038708 419.083