Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00810 ATGACTCCATCTAATTTGGCAGGGCAGTTTGGTGATACGACCTACACCAAGGTTTTTGTAGGAGGGTTGGCTTGGGAAACCCAGAAAGAGACGATGAAGAAGTATTTTGAACAGTTTGGTGACATCTTGGAGGCTGTTGTCATTACTGATAAAGCCACTGGAAGATCCAAGGGCTATGGATTTGTGACTTTTCGAGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGATGGAAGGAGGGCCAACTGCAATCTGGCTTCTTTGGGTGTTCAGAGATCCAAGCCTTCAACACCAAAACATGGAAAAAATGGAACAGGTGGAGGCAGAAACTTTAGGGTAATGGGCTCTTTCCAGACAGGGTTTGGTGGGAGTGCTGGAGCAGCTTTTCCAGCGACCTTCCCTCATTATGCCTTTCAACAAGGGATACCTTACAATGTTTATGGGTATTCTTCGTACTCGCCAGATTACACATACCCTACGAGCTATTACAATGTTTATGGAGGTGCAACTACGCAATATCCAGTGTACGGGACTGGGGTGGGGGGGATGATGACTACCGGAGCGACAGCGGCAGCCGCCGCCGCCGCCGCCTTTTACCCTTTTCTCCAGTTTGGAGAAGGAAGTGGTGGGGCCACGGGCTACTCTTCTGGTCAAGGCTATGGCTTCCAATATCCTCACCATCTTCTTCAATATTCACCGATTACTTCAAATGCTAACACTTATCCTCATCACTATGCTCCGCCCATGTCTCTCGCTCCTACTCCTGCTTTGCAATCAGGTTTCTTCTCTCTTCCATTCTCCTCCAAATTTCATGTTCTGAGTGTGTTAAAAGAGGTGTTCGAAAGTGTGAAACTTAAGGATGGTGGTGATATTTGTGATAGTTTTAGGTTCCAACCTTTCTCATCACGGGCTGACTTATCAACTCCTAGTCAGAAATTTACTCCTCAAGCTCCCGGGGATAAGACTGCAAGAATATTTGCACCTTATTCTGTTTATAAGGGCAAAGCAGCTCTCTCTCTGAATCCTATTCTCCCTACTTTCACAAAATTGGAGTCGGGAAATCAGGTTATGGATCGGCGTGGTTCAATGATGTTGCAGTTCTTACCTGCTATTGGTGAACGTAAGTATGACTGGGAGAAGAAGCAGTTGTTTGCGTTGTCACCGACAGAAGTTGGTACTTTATTGAATTTGGGTCCCAAAGATTCATGTGAATTCTTTCACGATCCTTCAATGTTATCAAGTAATGCGGGTCAAGTGAAGAAAAGCTTATCAATTAAGTCAATTGGAGAGGGTACCGGCTACTTCGTCTCTTTGAGTGTTGTGAACAATCTTCTAAAAACCAAAGAAAATTTTACTGTCCCTGTTACTGCCAGTGAATTTGCTGTAATGAAGACAGCATGCAGTCTCGTAAGAAGTCACTTTTGGACTTTTGACGTTGCAAAGCAGCTTCTTAGGATATGTAAAACTTATCTGGCCTTTTGTTTGTTTAACAATCTTGATGTGAAAGGCGAAGAACCAGTCCGATTATGCACTGCCATATATATTCACTGCCATGGCCTCCTGTTGACATTCTCTTGTAACTACCGATACACCTGCTCAAACAGATCAGATTTTGAAGAAAACAAGACAATGAACACGAACGTAGACACTTGGCAAATCATTCACATTTCTGAAAATCCTCGTATCTCCCCTGACCAACAGCCAACTGTGAACGTTTTCGCCGCTGATGTTGAGCCCAAGCTAGTGAATGCTCTTGTAAGGCGCTTAAATCAGATCGCACCTTTGGAAAGTCTACGACACGTGAAGAGAGTTCAGAAGAAATGTATTGATGGAACAACTCAGTTAGCTGTGATCTTATGTCAAGCTAATGAAAATGATTCTCACCCGGATAGCATACCTCACAACATTCGAGAGCTTATGAATTGCCATCAGTTGAGTGCTTTTATTACAAAAGTTTGCAAAGAAGCAGCGTCATCAAAAGAACAGTGGGAAGAACAATGCAAGCTTTGGCCAACATCCTATCATCCACCAACCTACAAGATTGATGGTGTTGCTGGATTTAGTGAAGAGGACCGACAATCTGTCATTGGCTTTATGAAGTTTACTGTTGAGTTGGCAAAATATGGTGATGATTTGGTAGTCAATGCTGCAGTAATAGTGGATCCTGCAGTTAAGCAGATCATAGCAAGTGCATGTGATGAAACTTATACTCAAAATACATCTGGAAGGGAACCGTGCTTCAATAACTGCTCCTCCCGTTTCGATAACTGCAGTGGAAAGAGAGACGATGAAGAGTTGCCATCAAATGGTTGTCTCGAAGAACTGAATCGGAATCGTAGTGGTGTATCTTGTCTGTATCCTTGGCAGTGGGATAAACAACCATCACACATGGACAATTGGCATCCCTTGAGACACGCTGCAATGGTTGCTATTGAATCGTCTGCTGCCAGGGACAGAAAACTATTCCCCGGTTACGGGAACATTGGAGAAAACTCAGTTGAATTAAGCCAGGCGGAGGCCTCGTCCGTCAGTTCTTCCTCAAAACGACAGAAGATCGATCTGAAAAACGGTGGGAAGAGTAGTTCTCCTGGTGATGAAAGTGTTTCTGCCGTTGCGCCCAGGCCATACCTGTGCACTGGCTATGACATGTACTTGGTGTGCAATGGCGCTTGTCCACCAGAGAATGAGGAGAATATTTTATGCCTATCCGAACCCAAATGCTGGTGCGCTTGGCAGTGTTCACAGACTGCAGGGAGAAAAGAGCTTGAACCATCATTATGCTGTTTTCAGGGTGCTACTGCCCGAGCCTTAGGCATCATCCAACCTTTTGCTTTGAAAAGGGTGCAAATGTGGATTATGCAGACTGCTCGTGGAGGATTTGTTATCGGTTTCTTGATTTTACTATTTCAGACTGAGATAACAGTCTCAAAGTTTCAAAACCGTGTCCAAGTATATGGAGTAGAAGGAGGGCTTCCTGTCTTTTTTGATATTGATGGACGAGGCAGTGAGATATTCCCAACAGTATATTCCCTCTGGAAAGTCCCTGAACTATTGCCCGCCTTTTTTCTGAAAGGGGGGGAAGTCTCCCGCTATATCATTGGTGGGGCAGATCTTATGTTCCCAGGCATCAGTGTACCTGTCGAAGGTCTACCTTCTTTTTTGGCTGGGGAAACATGGGCCGTAAAGGTTCCTGGAAATTTGGCTGCTATCGCTGTTGGAACAACCACTATGAGCAGTGAGGAAGCATTAAAGGCAGGTTTAAGAGGAAAGGCTTTGCGAATTGTGCACTATTATGGGGATCTACTTTGGGAGTCTGCTGAGGGCCATTATGTGCCTAATGCGGGCTTTTTAGAGGATGTTGTGTTTGAAGATCCTGCCTGTACGGCTATCTCTCAATTTTCTCATTCACTTGAAGGTGCTGTCGATAGTTCTGATAATCAACAAGATGATGATGATGAAGTAGAGGAACCCGAAAATGATAATAATTTGGAGCCTAGTTCTTCAAAAGCATCGGTTCCTAAAGATATTGCTGAAGATATTATTTTAGATGTTGATTCTTTGAAGGTCACAGACGTTTTACCTGAAGAACAAAGTGATAATCACCATCTTTCTGTGGAGGATGTGGATACCCTTTTGGACAAATGCCTTTTGCAAGCTTTACATACAACAGTTAACGACAAAGATATTCCTTTGGCAGGAAGCACTCTCTGGTCAAATCATGTACTACCTTGCCGACCTTCTGGAGTCACTCTTGATATAAAGAAATCATCTTATAAGAAATTGTCAAAGTGGTTACAAGCAAAATCTTCTATTGGACTGGTGTAG 3840 43.93 MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGKNGTGGGRNFRVMGSFQTGFGGSAGAAFPATFPHYAFQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATTQYPVYGTGVGGMMTTGATAAAAAAAAFYPFLQFGEGSGGATGYSSGQGYGFQYPHHLLQYSPITSNANTYPHHYAPPMSLAPTPALQSGFFSLPFSSKFHVLSVLKEVFESVKLKDGGDICDSFRFQPFSSRADLSTPSQKFTPQAPGDKTARIFAPYSVYKGKAALSLNPILPTFTKLESGNQVMDRRGSMMLQFLPAIGERKYDWEKKQLFALSPTEVGTLLNLGPKDSCEFFHDPSMLSSNAGQVKKSLSIKSIGEGTGYFVSLSVVNNLLKTKENFTVPVTASEFAVMKTACSLVRSHFWTFDVAKQLLRICKTYLAFCLFNNLDVKGEEPVRLCTAIYIHCHGLLLTFSCNYRYTCSNRSDFEENKTMNTNVDTWQIIHISENPRISPDQQPTVNVFAADVEPKLVNALVRRLNQIAPLESLRHVKRVQKKCIDGTTQLAVILCQANENDSHPDSIPHNIRELMNCHQLSAFITKVCKEAASSKEQWEEQCKLWPTSYHPPTYKIDGVAGFSEEDRQSVIGFMKFTVELAKYGDDLVVNAAVIVDPAVKQIIASACDETYTQNTSGREPCFNNCSSRFDNCSGKRDDEELPSNGCLEELNRNRSGVSCLYPWQWDKQPSHMDNWHPLRHAAMVAIESSAARDRKLFPGYGNIGENSVELSQAEASSVSSSSKRQKIDLKNGGKSSSPGDESVSAVAPRPYLCTGYDMYLVCNGACPPENEENILCLSEPKCWCAWQCSQTAGRKELEPSLCCFQGATARALGIIQPFALKRVQMWIMQTARGGFVIGFLILLFQTEITVSKFQNRVQVYGVEGGLPVFFDIDGRGSEIFPTVYSLWKVPELLPAFFLKGGEVSRYIIGGADLMFPGISVPVEGLPSFLAGETWAVKVPGNLAAIAVGTTTMSSEEALKAGLRGKALRIVHYYGDLLWESAEGHYVPNAGFLEDVVFEDPACTAISQFSHSLEGAVDSSDNQQDDDDEVEEPENDNNLEPSSSKASVPKDIAEDIILDVDSLKVTDVLPEEQSDNHHLSVEDVDTLLDKCLLQALHTTVNDKDIPLAGSTLWSNHVLPCRPSGVTLDIKKSSYKKLSKWLQAKSSIGLV 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26465242 26486238 + BLOR04829 Blo12g00810 68071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00810 1279 Gene3D Transcriptional Coactivator Pc4; Chain A 322 489 IPR009044 GO:0003677|GO:0006355
Blo12g00810 1279 ProSiteProfiles PUA domain profile. 1023 1104 - -
Blo12g00810 1279 Gene3D - 3 115 IPR012677 -
Blo12g00810 1279 MobiDBLite consensus disorder prediction 844 872 - -
Blo12g00810 1279 MobiDBLite consensus disorder prediction 844 875 - -
Blo12g00810 1279 SUPERFAMILY ssDNA-binding transcriptional regulator domain 329 478 IPR009044 GO:0003677|GO:0006355
Blo12g00810 1279 PANTHER BOULE-RELATED 1 265 IPR037366 GO:0003729
Blo12g00810 1279 MobiDBLite consensus disorder prediction 1149 1165 - -
Blo12g00810 1279 CDD RRM_RBM24_RBM38_like 16 91 - -
Blo12g00810 1279 SMART rrm1_1 17 89 IPR000504 GO:0003723
Blo12g00810 1279 Pfam Whirly transcription factor 336 470 IPR013742 GO:0003697|GO:0006355|GO:0006952
Blo12g00810 1279 PANTHER OS01G0876800 PROTEIN 1 265 - -
Blo12g00810 1279 Gene3D - 970 1116 - -
Blo12g00810 1279 Pfam Pre-PUA-like domain 976 1020 IPR041366 -
Blo12g00810 1279 SUPERFAMILY RNA-binding domain, RBD 15 120 IPR035979 GO:0003676
Blo12g00810 1279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Blo12g00810 1279 MobiDBLite consensus disorder prediction 1143 1176 - -
Blo12g00810 1279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Blo12g00810 1279 SUPERFAMILY PUA domain-like 1033 1109 IPR015947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00810 K15027 EIF2D; translation initiation factor 2D - qsu:112038708 419.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01688 Blo12g00810 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00252 Blo-Chr1:3249882 Blo12g00810 Blo-Chr12:26465242 1.12E-48 dispersed
Blo04g00307 Blo-Chr4:2409645 Blo12g00810 Blo-Chr12:26465242 1.15E-41 dispersed
Blo12g00207 Blo-Chr12:13356202 Blo12g00810 Blo-Chr12:26465242 4.55E-51 dispersed
Blo12g00810 Blo-Chr12:26465242 Blo16g01129 Blo-Chr16:39821002 5.30E-40 dispersed
Blo08g00657 Blo-Chr8:26185754 Blo12g00810 Blo-Chr12:26465242 6.34E-51 transposed
Blo11g00031 Blo-Chr11:252805 Blo12g00810 Blo-Chr12:26465242 1.54E-46 transposed
Blo11g00521 Blo-Chr11:4801984 Blo12g00810 Blo-Chr12:26465242 6.18E-10 transposed
Blo17g00909 Blo-Chr17:29897934 Blo12g00810 Blo-Chr12:26465242 5.20E-50 transposed
Blo18g00730 Blo-Chr18:19540387 Blo12g00810 Blo-Chr12:26465242 5.17E-54 transposed
Blo01g01688 Blo-Chr1:56599331 Blo12g00810 Blo-Chr12:26465242 3.57E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g01129 BCT 10 245 Whirly Transcription Factor Family AT1G14410 61.4 5.2e-77 284.6
Blo12g00810 BCT 305 478 Whirly Transcription Factor Family AT1G71260 62.6 1.7e-58 223.0
Blo16g01129 BCT 51 245 Whirly Transcription Factor Family AT2G02740 69.9 2.5e-74 275.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007713 2 3 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 0 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13052 PF08536 Whirly 3.80E-55 CL0609 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00810 Blo_Chr12 FPKM 16.65766 18.246704 92.451576 89.948402 11.495284 7.896521 9.143819 2.428648 4.126987 3.161454