Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g00810 | ATGACTCCATCTAATTTGGCAGGGCAGTTTGGTGATACGACCTACACCAAGGTTTTTGTAGGAGGGTTGGCTTGGGAAACCCAGAAAGAGACGATGAAGAAGTATTTTGAACAGTTTGGTGACATCTTGGAGGCTGTTGTCATTACTGATAAAGCCACTGGAAGATCCAAGGGCTATGGATTTGTGACTTTTCGAGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGATGGAAGGAGGGCCAACTGCAATCTGGCTTCTTTGGGTGTTCAGAGATCCAAGCCTTCAACACCAAAACATGGAAAAAATGGAACAGGTGGAGGCAGAAACTTTAGGGTAATGGGCTCTTTCCAGACAGGGTTTGGTGGGAGTGCTGGAGCAGCTTTTCCAGCGACCTTCCCTCATTATGCCTTTCAACAAGGGATACCTTACAATGTTTATGGGTATTCTTCGTACTCGCCAGATTACACATACCCTACGAGCTATTACAATGTTTATGGAGGTGCAACTACGCAATATCCAGTGTACGGGACTGGGGTGGGGGGGATGATGACTACCGGAGCGACAGCGGCAGCCGCCGCCGCCGCCGCCTTTTACCCTTTTCTCCAGTTTGGAGAAGGAAGTGGTGGGGCCACGGGCTACTCTTCTGGTCAAGGCTATGGCTTCCAATATCCTCACCATCTTCTTCAATATTCACCGATTACTTCAAATGCTAACACTTATCCTCATCACTATGCTCCGCCCATGTCTCTCGCTCCTACTCCTGCTTTGCAATCAGGTTTCTTCTCTCTTCCATTCTCCTCCAAATTTCATGTTCTGAGTGTGTTAAAAGAGGTGTTCGAAAGTGTGAAACTTAAGGATGGTGGTGATATTTGTGATAGTTTTAGGTTCCAACCTTTCTCATCACGGGCTGACTTATCAACTCCTAGTCAGAAATTTACTCCTCAAGCTCCCGGGGATAAGACTGCAAGAATATTTGCACCTTATTCTGTTTATAAGGGCAAAGCAGCTCTCTCTCTGAATCCTATTCTCCCTACTTTCACAAAATTGGAGTCGGGAAATCAGGTTATGGATCGGCGTGGTTCAATGATGTTGCAGTTCTTACCTGCTATTGGTGAACGTAAGTATGACTGGGAGAAGAAGCAGTTGTTTGCGTTGTCACCGACAGAAGTTGGTACTTTATTGAATTTGGGTCCCAAAGATTCATGTGAATTCTTTCACGATCCTTCAATGTTATCAAGTAATGCGGGTCAAGTGAAGAAAAGCTTATCAATTAAGTCAATTGGAGAGGGTACCGGCTACTTCGTCTCTTTGAGTGTTGTGAACAATCTTCTAAAAACCAAAGAAAATTTTACTGTCCCTGTTACTGCCAGTGAATTTGCTGTAATGAAGACAGCATGCAGTCTCGTAAGAAGTCACTTTTGGACTTTTGACGTTGCAAAGCAGCTTCTTAGGATATGTAAAACTTATCTGGCCTTTTGTTTGTTTAACAATCTTGATGTGAAAGGCGAAGAACCAGTCCGATTATGCACTGCCATATATATTCACTGCCATGGCCTCCTGTTGACATTCTCTTGTAACTACCGATACACCTGCTCAAACAGATCAGATTTTGAAGAAAACAAGACAATGAACACGAACGTAGACACTTGGCAAATCATTCACATTTCTGAAAATCCTCGTATCTCCCCTGACCAACAGCCAACTGTGAACGTTTTCGCCGCTGATGTTGAGCCCAAGCTAGTGAATGCTCTTGTAAGGCGCTTAAATCAGATCGCACCTTTGGAAAGTCTACGACACGTGAAGAGAGTTCAGAAGAAATGTATTGATGGAACAACTCAGTTAGCTGTGATCTTATGTCAAGCTAATGAAAATGATTCTCACCCGGATAGCATACCTCACAACATTCGAGAGCTTATGAATTGCCATCAGTTGAGTGCTTTTATTACAAAAGTTTGCAAAGAAGCAGCGTCATCAAAAGAACAGTGGGAAGAACAATGCAAGCTTTGGCCAACATCCTATCATCCACCAACCTACAAGATTGATGGTGTTGCTGGATTTAGTGAAGAGGACCGACAATCTGTCATTGGCTTTATGAAGTTTACTGTTGAGTTGGCAAAATATGGTGATGATTTGGTAGTCAATGCTGCAGTAATAGTGGATCCTGCAGTTAAGCAGATCATAGCAAGTGCATGTGATGAAACTTATACTCAAAATACATCTGGAAGGGAACCGTGCTTCAATAACTGCTCCTCCCGTTTCGATAACTGCAGTGGAAAGAGAGACGATGAAGAGTTGCCATCAAATGGTTGTCTCGAAGAACTGAATCGGAATCGTAGTGGTGTATCTTGTCTGTATCCTTGGCAGTGGGATAAACAACCATCACACATGGACAATTGGCATCCCTTGAGACACGCTGCAATGGTTGCTATTGAATCGTCTGCTGCCAGGGACAGAAAACTATTCCCCGGTTACGGGAACATTGGAGAAAACTCAGTTGAATTAAGCCAGGCGGAGGCCTCGTCCGTCAGTTCTTCCTCAAAACGACAGAAGATCGATCTGAAAAACGGTGGGAAGAGTAGTTCTCCTGGTGATGAAAGTGTTTCTGCCGTTGCGCCCAGGCCATACCTGTGCACTGGCTATGACATGTACTTGGTGTGCAATGGCGCTTGTCCACCAGAGAATGAGGAGAATATTTTATGCCTATCCGAACCCAAATGCTGGTGCGCTTGGCAGTGTTCACAGACTGCAGGGAGAAAAGAGCTTGAACCATCATTATGCTGTTTTCAGGGTGCTACTGCCCGAGCCTTAGGCATCATCCAACCTTTTGCTTTGAAAAGGGTGCAAATGTGGATTATGCAGACTGCTCGTGGAGGATTTGTTATCGGTTTCTTGATTTTACTATTTCAGACTGAGATAACAGTCTCAAAGTTTCAAAACCGTGTCCAAGTATATGGAGTAGAAGGAGGGCTTCCTGTCTTTTTTGATATTGATGGACGAGGCAGTGAGATATTCCCAACAGTATATTCCCTCTGGAAAGTCCCTGAACTATTGCCCGCCTTTTTTCTGAAAGGGGGGGAAGTCTCCCGCTATATCATTGGTGGGGCAGATCTTATGTTCCCAGGCATCAGTGTACCTGTCGAAGGTCTACCTTCTTTTTTGGCTGGGGAAACATGGGCCGTAAAGGTTCCTGGAAATTTGGCTGCTATCGCTGTTGGAACAACCACTATGAGCAGTGAGGAAGCATTAAAGGCAGGTTTAAGAGGAAAGGCTTTGCGAATTGTGCACTATTATGGGGATCTACTTTGGGAGTCTGCTGAGGGCCATTATGTGCCTAATGCGGGCTTTTTAGAGGATGTTGTGTTTGAAGATCCTGCCTGTACGGCTATCTCTCAATTTTCTCATTCACTTGAAGGTGCTGTCGATAGTTCTGATAATCAACAAGATGATGATGATGAAGTAGAGGAACCCGAAAATGATAATAATTTGGAGCCTAGTTCTTCAAAAGCATCGGTTCCTAAAGATATTGCTGAAGATATTATTTTAGATGTTGATTCTTTGAAGGTCACAGACGTTTTACCTGAAGAACAAAGTGATAATCACCATCTTTCTGTGGAGGATGTGGATACCCTTTTGGACAAATGCCTTTTGCAAGCTTTACATACAACAGTTAACGACAAAGATATTCCTTTGGCAGGAAGCACTCTCTGGTCAAATCATGTACTACCTTGCCGACCTTCTGGAGTCACTCTTGATATAAAGAAATCATCTTATAAGAAATTGTCAAAGTGGTTACAAGCAAAATCTTCTATTGGACTGGTGTAG | 3840 | 43.93 | MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGKNGTGGGRNFRVMGSFQTGFGGSAGAAFPATFPHYAFQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATTQYPVYGTGVGGMMTTGATAAAAAAAAFYPFLQFGEGSGGATGYSSGQGYGFQYPHHLLQYSPITSNANTYPHHYAPPMSLAPTPALQSGFFSLPFSSKFHVLSVLKEVFESVKLKDGGDICDSFRFQPFSSRADLSTPSQKFTPQAPGDKTARIFAPYSVYKGKAALSLNPILPTFTKLESGNQVMDRRGSMMLQFLPAIGERKYDWEKKQLFALSPTEVGTLLNLGPKDSCEFFHDPSMLSSNAGQVKKSLSIKSIGEGTGYFVSLSVVNNLLKTKENFTVPVTASEFAVMKTACSLVRSHFWTFDVAKQLLRICKTYLAFCLFNNLDVKGEEPVRLCTAIYIHCHGLLLTFSCNYRYTCSNRSDFEENKTMNTNVDTWQIIHISENPRISPDQQPTVNVFAADVEPKLVNALVRRLNQIAPLESLRHVKRVQKKCIDGTTQLAVILCQANENDSHPDSIPHNIRELMNCHQLSAFITKVCKEAASSKEQWEEQCKLWPTSYHPPTYKIDGVAGFSEEDRQSVIGFMKFTVELAKYGDDLVVNAAVIVDPAVKQIIASACDETYTQNTSGREPCFNNCSSRFDNCSGKRDDEELPSNGCLEELNRNRSGVSCLYPWQWDKQPSHMDNWHPLRHAAMVAIESSAARDRKLFPGYGNIGENSVELSQAEASSVSSSSKRQKIDLKNGGKSSSPGDESVSAVAPRPYLCTGYDMYLVCNGACPPENEENILCLSEPKCWCAWQCSQTAGRKELEPSLCCFQGATARALGIIQPFALKRVQMWIMQTARGGFVIGFLILLFQTEITVSKFQNRVQVYGVEGGLPVFFDIDGRGSEIFPTVYSLWKVPELLPAFFLKGGEVSRYIIGGADLMFPGISVPVEGLPSFLAGETWAVKVPGNLAAIAVGTTTMSSEEALKAGLRGKALRIVHYYGDLLWESAEGHYVPNAGFLEDVVFEDPACTAISQFSHSLEGAVDSSDNQQDDDDEVEEPENDNNLEPSSSKASVPKDIAEDIILDVDSLKVTDVLPEEQSDNHHLSVEDVDTLLDKCLLQALHTTVNDKDIPLAGSTLWSNHVLPCRPSGVTLDIKKSSYKKLSKWLQAKSSIGLV | 1279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 26465242 | 26486238 | + | BLOR04829 | Blo12g00810 | 68071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g00810 | 1279 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 322 | 489 | IPR009044 | GO:0003677|GO:0006355 | |
Blo12g00810 | 1279 | ProSiteProfiles | PUA domain profile. | 1023 | 1104 | - | - | |
Blo12g00810 | 1279 | Gene3D | - | 3 | 115 | IPR012677 | - | |
Blo12g00810 | 1279 | MobiDBLite | consensus disorder prediction | 844 | 872 | - | - | |
Blo12g00810 | 1279 | MobiDBLite | consensus disorder prediction | 844 | 875 | - | - | |
Blo12g00810 | 1279 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 329 | 478 | IPR009044 | GO:0003677|GO:0006355 | |
Blo12g00810 | 1279 | PANTHER | BOULE-RELATED | 1 | 265 | IPR037366 | GO:0003729 | |
Blo12g00810 | 1279 | MobiDBLite | consensus disorder prediction | 1149 | 1165 | - | - | |
Blo12g00810 | 1279 | CDD | RRM_RBM24_RBM38_like | 16 | 91 | - | - | |
Blo12g00810 | 1279 | SMART | rrm1_1 | 17 | 89 | IPR000504 | GO:0003723 | |
Blo12g00810 | 1279 | Pfam | Whirly transcription factor | 336 | 470 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Blo12g00810 | 1279 | PANTHER | OS01G0876800 PROTEIN | 1 | 265 | - | - | |
Blo12g00810 | 1279 | Gene3D | - | 970 | 1116 | - | - | |
Blo12g00810 | 1279 | Pfam | Pre-PUA-like domain | 976 | 1020 | IPR041366 | - | |
Blo12g00810 | 1279 | SUPERFAMILY | RNA-binding domain, RBD | 15 | 120 | IPR035979 | GO:0003676 | |
Blo12g00810 | 1279 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 100 | IPR000504 | GO:0003723 | |
Blo12g00810 | 1279 | MobiDBLite | consensus disorder prediction | 1143 | 1176 | - | - | |
Blo12g00810 | 1279 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 73 | IPR000504 | GO:0003723 | |
Blo12g00810 | 1279 | SUPERFAMILY | PUA domain-like | 1033 | 1109 | IPR015947 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo01g01688 | Blo12g00810 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00252 | Blo-Chr1:3249882 | Blo12g00810 | Blo-Chr12:26465242 | 1.12E-48 | dispersed | |
Blo04g00307 | Blo-Chr4:2409645 | Blo12g00810 | Blo-Chr12:26465242 | 1.15E-41 | dispersed | |
Blo12g00207 | Blo-Chr12:13356202 | Blo12g00810 | Blo-Chr12:26465242 | 4.55E-51 | dispersed | |
Blo12g00810 | Blo-Chr12:26465242 | Blo16g01129 | Blo-Chr16:39821002 | 5.30E-40 | dispersed | |
Blo08g00657 | Blo-Chr8:26185754 | Blo12g00810 | Blo-Chr12:26465242 | 6.34E-51 | transposed | |
Blo11g00031 | Blo-Chr11:252805 | Blo12g00810 | Blo-Chr12:26465242 | 1.54E-46 | transposed | |
Blo11g00521 | Blo-Chr11:4801984 | Blo12g00810 | Blo-Chr12:26465242 | 6.18E-10 | transposed | |
Blo17g00909 | Blo-Chr17:29897934 | Blo12g00810 | Blo-Chr12:26465242 | 5.20E-50 | transposed | |
Blo18g00730 | Blo-Chr18:19540387 | Blo12g00810 | Blo-Chr12:26465242 | 5.17E-54 | transposed | |
Blo01g01688 | Blo-Chr1:56599331 | Blo12g00810 | Blo-Chr12:26465242 | 3.57E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13052 | PF08536 | Whirly | 3.80E-55 | CL0609 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g00810 | K15027 | - | qsu:112038708 | 419.083 |