Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00811 ATGCTATTAACTATTAACCGCAATCATCCAGACTATTCATCTTTCAGACCAGAGAAGCAACAGATTGAAAAGACTGAACAGAGTGCCACTCCTGCTGTCAGTGACGCACGGTCACTTAAAAAGCTCGAGGTGGCAGAGATCTACAAGCCAAGTGTGCATGTCAATCCCATTTTTGCTGCAGTGGGAGCAGAAACGGGCAAGCTTTATAGTTCAACAGAAGCCAGTGAGATTGTCTTCAAGTACATCGAAAGAGAGAGTTTGGTCAAACCAACTAACAAATCCATAGTAGTTTTGGATGCAGTATTATGTGATGCACTATTCAAAGGGGCTATTAAGAAAGGGTCGACCTACCCGACTGAGATTCATAAAAAAGATGTGGGAGCCACATTTATTAGCCGCATGCAACCCCATCATGTTGTCTCGAGAGGAAATGATTCAGTTGTTCGTAAAGGTACATTGAAAGCAATTCAGATAATGACAGAGCGTCGACAAGGAAACAAGAAGGTGACTAGACTTTCTGGGTTAGAGTCATTTTTGGTAGATGCTGAAGCTTTGGCATCAGAGTTGCAGAAGAAGTTTGCATGCAGTACAACTGTTGCTGAACTGCCTGGTAAGAAAGGGTATGAAGTTGTGGTTCAAGGCGGCGTAATCGATGATTTGGCAAAACATTTGGTCGAACAGTTTGGGATACCGAAGAAACACATTGAGAAAACAATAGATGGTATAAGAGAATGTTTCTTGCAAACTCATTGCATTGTCGTCTCGGTTAATTACTGCCTCGCTCCTGAACACCGGTTTCCTTGCCAGTATGAGGACGGATTTGATGCTTTGAAATTTATCGACGAAATGGATGACGACGCTTTTCCGGCTGGCGCAGATCAGAGTTGCTGCTTTCTTGCGGGGGAAAGTGCAGGCGGGAATTTAGCGTACCATGTGGCGGTGAAAGCGAGCGAGTACAACCGTTTTTGGGAGAAGAGGATCGCACCGAGTCTGAGCTTTGCCTATCCCGCGCGCCGCTCCTGCCCCTCAGCATTTCCAAAAGCGATTCTTCCAGTAGGGTGA 1062 45.39 MLLTINRNHPDYSSFRPEKQQIEKTEQSATPAVSDARSLKKLEVAEIYKPSVHVNPIFAAVGAETGKLYSSTEASEIVFKYIERESLVKPTNKSIVVLDAVLCDALFKGAIKKGSTYPTEIHKKDVGATFISRMQPHHVVSRGNDSVVRKGTLKAIQIMTERRQGNKKVTRLSGLESFLVDAEALASELQKKFACSTTVAELPGKKGYEVVVQGGVIDDLAKHLVEQFGIPKKHIEKTIDGIRECFLQTHCIVVSVNYCLAPEHRFPCQYEDGFDALKFIDEMDDDAFPAGADQSCCFLAGESAGGNLAYHVAVKASEYNRFWEKRIAPSLSFAYPARRSCPSAFPKAILPVG 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26486738 26488351 + BLOR04830 Blo12g00811 68072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00811 353 Pfam Translation initiation factor SUI1 154 231 IPR001950 GO:0003743|GO:0006413
Blo12g00811 353 Gene3D alpha/beta hydrolase 237 348 IPR029058 -
Blo12g00811 353 ProSiteProfiles Translation initiation factor SUI1 family profile. 156 228 IPR001950 GO:0003743|GO:0006413
Blo12g00811 353 SUPERFAMILY eIF1-like 121 236 IPR036877 GO:0003743|GO:0006413
Blo12g00811 353 MobiDBLite consensus disorder prediction 1 30 - -
Blo12g00811 353 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 3 237 IPR039757 GO:0001731|GO:0003743
Blo12g00811 353 SUPERFAMILY alpha/beta-Hydrolases 248 321 IPR029058 -
Blo12g00811 353 Gene3D - 152 236 - -
Blo12g00811 353 SUPERFAMILY SWIB/MDM2 domain 38 138 IPR036885 -
Blo12g00811 353 Pfam alpha/beta hydrolase fold 247 319 IPR013094 GO:0016787
Blo12g00811 353 CDD eIF2D_C 156 237 IPR039759 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00811 K15027 EIF2D; translation initiation factor 2D - gmx:100794290 379.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00811 Blo-Chr12:26486738 Blo01g01686 Blo-Chr1:56577901 1.08E-35 dispersed
Blo01g01685 Blo-Chr1:56557316 Blo12g00811 Blo-Chr12:26486738 2.65E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00811 Blo_Chr12 FPKM 2.191436 1.887872 0.672401 0.0 0.797311 0.997339 0.986512 0.0 0.0 0.0