Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00812 ATGGATTCCATAGATGCGATCGAGGAGCTATCGCAGCTCGCTGAGTCTATGAAGCAAGCTGCCGCTTTGCTTGCCGACGAAGATATTGACGAGAATTCCAGTTCTGGTGGTTCCTCTCGCAGGTCTTCCACTTTCCTCAACGTTGTTGCCCTCGGAAATGTTGGTGCCGGTAAATCTGCAGTTTTGAATAGTTTGATTGGACACCCTGTTTTGCCAACTGGTGAAAATGGTGCTACTCGTGCTCCCATAAGCATTGATTTACAGAGGGATGGTTCTTTGAGTAGCAAATCAATTATTTTGCAGATTGACAACAAATCACAGCAAGTTTCTGCAAGTGCTTTACGGCATTCTCTACAAGACAGACTGAGCAAAGGTGGTTCTGGGAAGAGTCGGGATGAAATATATTTAAAGCTTCGCACCAATACAGCGCCTCCCCTGAAATTGATTGATTTACCTGGGCTTGATCAACGGATAGTAGATGATTCTATGGTCAGTGACTATGCTGAACACAATGATGCCATATTACTAGTTATAGTACCTGCAGCTCAAGCTCCTGAGATTGCTTCATCTCGAGCTCTCAGGGCTGCAAAGGAATATGATGCAGAAGGTACCAGAACAATTGGAATAATCAGCAAAATAGATCAAGCTGCTTCAGATCCGAAATCACTTGCTGCAGTCCAGGCTATCCTTTTGAATAAAGGGCCATCACGCACATCAGACATCCCATGGGTTGCTTTGATTGGTCAATCAGTTTCGATTGCTTCTGCCCAGTCTGGATCTGTAGGCTCTGAAAGTTCCTTAGAAACTGCTTGGAAGGCAGAAACAGAGAGTCTCAAGTCCATATTAACCGGAGCACCACATAATAAGTTAGGTAGGATAGCATTGGTGGATGCTCTGGCACAACAGATACGAAATCGTATGAAAGTGCGCGTTCCAAAACTTCTCTCTGGATTGCAAGGAAAGTCTCAAATAGTTAAAGATGAGCTAGTAAGGCTTGGTGAACAAATGGTTCATGGTTCTGAGGGGACTAGGGCCTTAGCTTTGGAACTTTGCCGTGAATTCGAGGATAAGTTTCTCCAACATATTTCGACTGGTGAGGGTGCCGGTTGGAAAATTGTTGCTAACTTCGAGGGAAATTTTCCAAATAGAATCAAGCAGCTACCTTTGGATAGACACTTTGACATTAACAATGTGAAACGGATTGTGCTAGAAGCTGATGGTTATCAACCATACCTCATATCACCTGAAAAGGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCCAAAGAACCATCACGTCATTGTGTTGATGAGGTGCACCGGGTCCTGGTAGATATAGTGTCGGCTTCTGCAAGTTCTACACCAGGTCTTGGAAGATATCCTCCTTTTAAAAGAGAGGTTGTGGCCATTGCAAGTGCTGCATTAGACAGTTTTAAAACTGAAGCAAAGAAGATGGTGGTTGCATTAGTGGATATGGAGCGAGCTTTTGTTCCCCCTCAGCATTTTATCCGTTTGGTACAAAGGAGAATGGAGAGACAACGGCGAGAGGAGGAAATGAAACGATCTTCAAAAAAAGGTCCAGAGGCTGAACAGGGCATACTGAAAAGAGCAACTAGTCCCCAAACTGATAGTCAACAACCTGGCGGAAGTTTGAAATCAATGAAAGATAAATCTGGAAAGGAAGAGAAGGAAGCGCCAGAAAGTTCTGGTTTGAAGACCGCTGGTCCTGAAGGAGAAATAACGGCAGGTTATCTATTGAAGAAAAGTGCAAAAACTAATGGTTGGAGCCGCCGCTGGTTTGTTTTAAATGAGAAGACTGGAAAGCTTGGTTACACTAAAAAAGAAGAGGAGAGACATTTTCGTGGTGTCATCACCCTAGAGGAATGTGTGATAGAAGAAGGATTAGATGAAGAGGAGCCTCCTCCATCAAAGAGTTCAAAGGATAAAAAGGCCAGTGCTAATGGACCCTCAGGGAAAACGCCAAATCTTGTCTTCAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTGAAAGCGCACAGTGCTGTTGTCTTGAAGGCTGAGAGCATGACCGATAAGGTTGAATGGACAAATAAGCTACGCAATGTTATACAACCCTCTAAAGGAGGACAAACCAGAGGTGCATCTGAAGGTGGTGTTGCCATGCGGCAAAGTCTTTCCGATGGTTCTCTGGATACAATGGTTAGAAGGCCTGCTGATCCCGAAGAAGAACTACGATGGATATCTCAAGAAGTGCGGGGTTATGTGGAAGCAGTTTTGAGCAGTTTGGCTGCTAATGTTCCTAAAGCAGTTGTTCTCTGCCAAGTCGAGAAAGCTAAGGAAGACATGCTTAATCAGTTGTACAGCTCAATCAGTGCTCAAAGCACTGCAAGGATTGAAGAGCTACTTCAAGAGGACCAGAATGCAAGGCGTCGAAGGGAGAAATTCCAGAAACAGTCTTCTCTCCTCTCTAAATTAACTCGCCAACTTAGCATTCATGACAACCGAGCTGCTGCTGCTGCCTCCAGCTGGTCTGAAGGCAGTGAAACAGAAAGCAGTCCAAGAACGAGCGGTGCTCCTGCTGGGGACGATTGGAGATCTGCATTTGATGCTGCTGCCAACGGTCCCACTGACTACCAGAGGTCTTCTTCATCCAATGGACACAGTCGACACTACAGTGATCCGGCACAAAATGGTGAGGTCAACTCCGGTGCAAACTCTGGCAGCCGCCGGACTCCTAACCGACTGCCACCGCCTCCACCACAGTCCACACCCGGCTCCAAATATTTTTAG 2799 45.23 MDSIDAIEELSQLAESMKQAAALLADEDIDENSSSGGSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGGSGKSRDEIYLKLRTNTAPPLKLIDLPGLDQRIVDDSMVSDYAEHNDAILLVIVPAAQAPEIASSRALRAAKEYDAEGTRTIGIISKIDQAASDPKSLAAVQAILLNKGPSRTSDIPWVALIGQSVSIASAQSGSVGSESSLETAWKAETESLKSILTGAPHNKLGRIALVDALAQQIRNRMKVRVPKLLSGLQGKSQIVKDELVRLGEQMVHGSEGTRALALELCREFEDKFLQHISTGEGAGWKIVANFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRHCVDEVHRVLVDIVSASASSTPGLGRYPPFKREVVAIASAALDSFKTEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEMKRSSKKGPEAEQGILKRATSPQTDSQQPGGSLKSMKDKSGKEEKEAPESSGLKTAGPEGEITAGYLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKEEERHFRGVITLEECVIEEGLDEEEPPPSKSSKDKKASANGPSGKTPNLVFKITSKVPYKTVLKAHSAVVLKAESMTDKVEWTNKLRNVIQPSKGGQTRGASEGGVAMRQSLSDGSLDTMVRRPADPEEELRWISQEVRGYVEAVLSSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTARIEELLQEDQNARRRREKFQKQSSLLSKLTRQLSIHDNRAAAAASSWSEGSETESSPRTSGAPAGDDWRSAFDAAANGPTDYQRSSSSNGHSRHYSDPAQNGEVNSGANSGSRRTPNRLPPPPPQSTPGSKYF 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26489381 26502979 + BLOR04831 Blo12g00812 68073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00812 932 Coils Coil 801 821 - -
Blo12g00812 932 MobiDBLite consensus disorder prediction 556 570 - -
Blo12g00812 932 MobiDBLite consensus disorder prediction 649 663 - -
Blo12g00812 932 PANTHER DYNAMIN-2A 8 859 - -
Blo12g00812 932 Pfam Dynamin GTPase effector domain 744 827 IPR003130 GO:0003924|GO:0005525
Blo12g00812 932 Gene3D - 42 327 IPR027417 -
Blo12g00812 932 PANTHER DYNAMIN 8 859 IPR022812 -
Blo12g00812 932 SMART dynamin_3 17 244 IPR001401 GO:0003924|GO:0005525
Blo12g00812 932 Gene3D Dynamin, middle domain 340 548 - -
Blo12g00812 932 MobiDBLite consensus disorder prediction 515 533 - -
Blo12g00812 932 MobiDBLite consensus disorder prediction 537 554 - -
Blo12g00812 932 Pfam Dynamin family 48 212 IPR045063 -
Blo12g00812 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 321 IPR027417 -
Blo12g00812 932 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Blo12g00812 932 MobiDBLite consensus disorder prediction 707 740 - -
Blo12g00812 932 ProSiteProfiles PH domain profile. 580 707 IPR001849 -
Blo12g00812 932 MobiDBLite consensus disorder prediction 839 859 - -
Blo12g00812 932 SMART GED_2 742 835 IPR003130 GO:0003924|GO:0005525
Blo12g00812 932 Pfam Dynamin central region 265 503 IPR000375 -
Blo12g00812 932 MobiDBLite consensus disorder prediction 915 932 - -
Blo12g00812 932 Pfam PH domain 585 706 IPR001849 -
Blo12g00812 932 MobiDBLite consensus disorder prediction 515 579 - -
Blo12g00812 932 SUPERFAMILY PH domain-like 581 707 - -
Blo12g00812 932 SMART PH_update 581 709 IPR001849 -
Blo12g00812 932 MobiDBLite consensus disorder prediction 634 663 - -
Blo12g00812 932 Gene3D - 570 710 IPR011993 -
Blo12g00812 932 Coils Coil 7 27 - -
Blo12g00812 932 PRINTS Dynamin signature 201 217 IPR022812 -
Blo12g00812 932 PRINTS Dynamin signature 70 87 IPR022812 -
Blo12g00812 932 PRINTS Dynamin signature 182 200 IPR022812 -
Blo12g00812 932 PRINTS Dynamin signature 45 63 IPR022812 -
Blo12g00812 932 MobiDBLite consensus disorder prediction 839 932 - -
Blo12g00812 932 ProSiteProfiles GED domain profile. 747 840 IPR020850 -
Blo12g00812 932 CDD DLP_1 48 312 IPR001401 GO:0003924|GO:0005525
Blo12g00812 932 MobiDBLite consensus disorder prediction 878 914 - -
Blo12g00812 932 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00812 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1444.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01682 Blo12g00812 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00812 Blo-Chr12:26489381 Blo16g00754 Blo-Chr16:31196726 4.48E-08 dispersed
Blo01g01682 Blo-Chr1:56530144 Blo12g00812 Blo-Chr12:26489381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00812 Blo_Chr12 FPKM 66.835014 70.77018 13.8646 12.601708 19.1891 21.655851 17.397243 0.431938 0.0 0.315774