Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00822 ATGGAGGAATATGGTGGCGGCGGTGGACGTGCTCCTCCCACTTACAGAGGAGTGAGAAGGAGAAAATGGGGCAAATGGGTGTCCGAAATTCGAGAGCCGGGGAAGAAAACCCGAATATGGCTCGGGAGCTATGAGGCTCCGGAAATGGCAGCTGCCGCCTACGACGTGGCGGCGTTACACCTTAAAGGACCTGGTACCCACCTCAACTTTCCTGAGTTGGTGGGGAGTCTACCTCGACCGGCGACTTCTAGGCCGGAGGATATTCAACTGGCGGCACAAGAGGCGGCGTTGAGATTCAGAAAGCCGGCGAGCGTTTCGCCGGGGTCATCAGTGGGTATGTCCGGGGGAGAGAGAACGGTTCCTGCGGTGAGAGTGGGCCTTTCGCCGAGCCAAATACAGGCAATAAACGAGTGGCCCTTAGATTCTCCGACAATGTGGATGCAAATGTGTGAATACGACGAGTATAACAACAGTATAGAGTGGGACGAAGAGACGAGGCAGTCTGATCAGTCTCCCTCCATATGGGATTACTAA 534 55.06 MEEYGGGGGRAPPTYRGVRRRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLKGPGTHLNFPELVGSLPRPATSRPEDIQLAAQEAALRFRKPASVSPGSSVGMSGGERTVPAVRVGLSPSQIQAINEWPLDSPTMWMQMCEYDEYNNSIEWDEETRQSDQSPSIWDY 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26570630 26571163 - BLOR04841 Blo12g00822 68083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00822 177 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Blo12g00822 177 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Blo12g00822 177 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Blo12g00822 177 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Blo12g00822 177 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Blo12g00822 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 176 - -
Blo12g00822 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 14 176 - -
Blo12g00822 177 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Blo12g00822 177 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Blo12g00822 177 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00822 Blo-Chr12:26570630 Blo08g00315 Blo-Chr8:4539119 3.62E-35 dispersed
Blo01g01672 Blo-Chr1:56454109 Blo12g00822 Blo-Chr12:26570630 8.14E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13053 PF00847 AP2 2.20E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00822 - - rcu:8259377 200.675