Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00831 ATGTCAAGCTTTTTCTTTCCCTGCGGTTCGAAGAAGATGAACGATGGCGGACGATGGCAGAGACGAAGCTGGAATCGTCCAGAGGCGACGGACGGACGACATTCGTTGGCCGTTGGATCGAGCAAGGGACGTCCCTCATTTGGATCGACGGCCAAGATTGAATCTGGCGTCTCTGCTAGAGGACCGTTGAAAGGGTTCTTTAATGAGAATGATAGCGACGATCAGTCTTCTACGGTTTGTGTGATGGAAGTGAAGCTAAGCAAGAGGCACAGAGCAGACAATTTCCCATCCCTCCCCAATTTGACGCACCCATCTCCAAATCAAAGGTGTCTTCGTCTTCTTCTTCATTTTCTTCCAATTCCTGGTTCAATTGGAGCACCCTTTTCTTCGTTTTTCAGTATTTTTATGTTTTTCATTCGATTTGTTTCAGTCTTCATCTCCAATCTTGGCCTAATACTGCGAGATTGTTCAAGAAGCAATGGAGAGGTCTCGCGCTGGGGCGAGACTTTGAGTTCGATTTCAAAGCAATATGGAGTTCTTTCAAATGCCATTGCAGCAGCGAACACGAAAATGGTGGACATCGACCTTGTTTTCAGAGGACAGCGACTAAATATTCCTTCTGCCGTAGGAGACACTCGAGTGATTGGCGATAACTTTCGTGTACAAGATCAGATTCATGGCTCTCTGGATCAGAAAAGTTTCATCTCGCCTCGTCTAGTTCATGTTCGGTATCTTCTAGTTCTGGTTCCTTTTATAGCCGTTTGCATCAGATGCATCATTGTTGCCTCTTATGCCAGACCCACTGGACCATCGAAACATGGTAGATTAGATAAATCCGAGGGACAAGATCGTAGATTTAGAAGCGGCCGATGGAAATCTGCTCTCAGTGACGTAAGGGATCCTGATAGTTTGGATGCGAAATCAATAGTAGATTCTGATAGTGTTTTGGAAGACGAGGCACAAAATTCACACGAAGAGACGTTGCGTAATTATGAAGAACTCGAACGGGATTATCAGAACTTTTTATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGAGGAGGTTCTCATGAGTGA 1080 45.37 MSSFFFPCGSKKMNDGGRWQRRSWNRPEATDGRHSLAVGSSKGRPSFGSTAKIESGVSARGPLKGFFNENDSDDQSSTVCVMEVKLSKRHRADNFPSLPNLTHPSPNQRCLRLLLHFLPIPGSIGAPFSSFFSIFMFFIRFVSVFISNLGLILRDCSRSNGEVSRWGETLSSISKQYGVLSNAIAAANTKMVDIDLVFRGQRLNIPSAVGDTRVIGDNFRVQDQIHGSLDQKSFISPRLVHVRYLLVLVPFIAVCIRCIIVASYARPTGPSKHGRLDKSEGQDRRFRSGRWKSALSDVRDPDSLDAKSIVDSDSVLEDEAQNSHEETLRNYEELERDYQNFLSECGLSKWGYWRGGSHE 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26626756 26631711 - BLOR04850 Blo12g00831 68092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00831 359 MobiDBLite consensus disorder prediction 271 287 - -
Blo12g00831 359 CDD LysM 167 205 IPR018392 -
Blo12g00831 359 MobiDBLite consensus disorder prediction 268 287 - -
Blo12g00831 359 Gene3D LysM domain 163 212 IPR036779 -
Blo12g00831 359 Coils Coil 317 344 - -
Blo12g00831 359 Pfam LysM domain 167 206 IPR018392 -
Blo12g00831 359 SUPERFAMILY LysM domain 166 206 IPR036779 -
Blo12g00831 359 MobiDBLite consensus disorder prediction 16 51 - -
Blo12g00831 359 ProSiteProfiles LysM domain profile. 160 205 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00831 - - - qsu:111989759 194.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00831 Blo-Chr12:26626756 Blo01g01195 Blo-Chr1:44357674 2.43E-08 dispersed
Blo12g00831 Blo-Chr12:26626756 Blo06g01215 Blo-Chr6:35750183 1.18E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1662 . Blo12g00831 . . . . . . . . . . . . . . . . . . . . . . Cla08g00064 Cam08g0061 Cec08g0190 Cco08g0119 Clacu08g0076 Cmu08g0074 Cre08g0066 . . . . . . . Cme09g00041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00050 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011440 0 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00831 Blo_Chr12 FPKM 9.535982 8.085424 7.696498 8.710031 12.647842 11.688972 11.64994 11.656338 10.6876 9.620753