Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00832 ATGGCGGAGCAGAAGAAAGTTACGTGGTCTGTGTTGTTAGTGGTGTTTCTGTGTGCAGTTGCCGGGCAAGAAGATGGAGAACCATTGCCGCCAGGGGGAGGGAGGAGAGAGATGGTTCCTGCTATGTTCGTATTCGGAGATTCACTCATAGACAATGGAAACAACAACAACCTTCCCTCCTTAGCAAAAGCTAACTATTTTCCTTATGGCATCGACTTCAATGGCGGACCCACTGGTCGTTTTTCCAATGGCTACACCATAGTTGATGAAATAGCGGAGCTGTTGGGGCTTCCATTAATTCCGTCATTCTCTGAAGCTTCCGGGGATCAAGTTCTTCACGGCGTAAACTATGCTTCTGCAGCTGCTGGGATTCTAGACGACACTGGCAGAAACTTCGTGAGTCGAATCCCTTTTAATCAGCAAATAACTAACTTCCAGAACACCCTCGAACAAATCAGCAACAATCTCGGCGGTCAAGCTACTGTGGCAAGTGCAATCGGCCGGTGCATATTCTTCATCGGAATGGGCAGCAATGACTACCTAAACAACTACCTCATGCCTAATTACAACACCAAAAACCAGTACGATGGCCCGCAGTTCGCCAATCTGCTTGTGCAGCAATACTCTCAACAGCTCACTAGACTCTACAGTCTCGGGGCGAGGAAATTTGTAGTAGCTGGTGTGGGACAAATGGGTTGCGTTCCAAGCATATTAGCTCAGAGCCCTGTTGGAAGCTGCTCAGAAGTAGTAAACCAGCTTATTCTACCTTTCAACGCTAATGTCAAGGCAATGGTCAATAATCTCAACGCCAATCTACCCGGCTCTCGATTTACTCACATCGACATTGCTCGGATGTTCCAAGACATCCTCGTCAACGCACAATCATACGGGCTGAGCGTGATCAATAGAGGGTGTTGTGGAATAGGAAGGAACAGAGGGCAAATAACGTGTCTTCCATTTCAAACGCCATGTCCAAACAGAGAACAGTATGTTTTCTGGGATGCGTTTCATCCGACAGAAGCTGTCAACATTATAATGGGAAGGAAGGCCTTCAATGGAGACACCACCGTCGTATATCCTATCAACATACAGCAGCTTGCCAGCCTTTAA 1110 47.3 MAEQKKVTWSVLLVVFLCAVAGQEDGEPLPPGGGRREMVPAMFVFGDSLIDNGNNNNLPSLAKANYFPYGIDFNGGPTGRFSNGYTIVDEIAELLGLPLIPSFSEASGDQVLHGVNYASAAAGILDDTGRNFVSRIPFNQQITNFQNTLEQISNNLGGQATVASAIGRCIFFIGMGSNDYLNNYLMPNYNTKNQYDGPQFANLLVQQYSQQLTRLYSLGARKFVVAGVGQMGCVPSILAQSPVGSCSEVVNQLILPFNANVKAMVNNLNANLPGSRFTHIDIARMFQDILVNAQSYGLSVINRGCCGIGRNRGQITCLPFQTPCPNREQYVFWDAFHPTEAVNIIMGRKAFNGDTTVVYPINIQQLASL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26632195 26633707 + BLOR04851 Blo12g00832 68093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00832 369 Pfam GDSL-like Lipase/Acylhydrolase 43 348 IPR001087 GO:0016788
Blo12g00832 369 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 11 369 - -
Blo12g00832 369 Gene3D SGNH hydrolase 35 354 IPR036514 -
Blo12g00832 369 CDD SGNH_plant_lipase_like 40 354 IPR035669 -
Blo12g00832 369 PANTHER OS05G0419800 PROTEIN 11 369 - -
Blo12g00832 369 SUPERFAMILY SGNH hydrolase 166 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00832 - - - rcu:8263240 579.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01668 Blo12g00832 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01690 Blo-Chr1:56606697 Blo12g00832 Blo-Chr12:26632195 6.42E-118 dispersed
Blo07g00802 Blo-Chr7:25869609 Blo12g00832 Blo-Chr12:26632195 3.93E-59 dispersed
Blo11g00259 Blo-Chr11:2073472 Blo12g00832 Blo-Chr12:26632195 1.87E-121 dispersed
Blo12g00809 Blo-Chr12:26460626 Blo12g00832 Blo-Chr12:26632195 3.56E-120 dispersed
Blo12g00832 Blo-Chr12:26632195 Blo17g00251 Blo-Chr17:2498157 0 dispersed
Blo14g00314 Blo-Chr14:3215270 Blo12g00832 Blo-Chr12:26632195 3.24E-52 transposed
Blo15g00236 Blo-Chr15:2484556 Blo12g00832 Blo-Chr12:26632195 1.16E-64 transposed
Blo01g01668 Blo-Chr1:56428859 Blo12g00832 Blo-Chr12:26632195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1660 Blo01g01668 Blo12g00832 . . Bpe02g00274 Bpe04g00304 . . . . Cma01g00840 . . . . . . Bhi04g02590 . . . . . . . . . . . . . . . . . . . . Cme09g00036 . . Bda11g00935 . . . . . . Cmo01g00880 Cmo09g01300 . . . Car09g01143 . . . . . . . . . . . . . . . . Lsi08g00047 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00832 Blo_Chr12 FPKM 23.36636 24.593765 3.447557 3.686822 16.931961 13.211872 16.149069 6.451305 8.025844 6.571093