Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00834 ATGGTGAAGGACACCGAATACTACGACGTGCTTGGAGTCAGCCCCACCGCCTCCGAGGCCGAGATTAAGAAAGCATACTATTTGAAGGCGAGACAAGTCCATCCAGATAAAAATCTAAACGACCCACTTGCAGCACAAAAGTTTCAGGTGTTGGGAGAGGCCTACCAGGTATTATGTGATCCAGGACAACGACAAGCATACGATGCTTATGGAAAATCTGGAGTCTCAACCGACGCAATTATTGAACCAGCGGCCATCTTTGCCATGCTTTTTGGAAGTGAACTTTTTGAAGAATATATTGGCCAGCTGGCAATGGCATCAATGACTTCACTTGATATTTTTACGGAAGGGGAGCAGTTTGATGCCAAAAAGTTGCAGGAGAAAATGAGGATAGTCCAAAAGGAAAGAGAGGACAAGCTTGCAGAAAAACTTAAAGATCGATTAAACCAGTATGTGCAAGGTAGTAAAGAAGAATTTATTAAACATGCTGAAGCTGAAGTGGCAAGACTTTCCAATGCAGCCTACGGCGTTGACATGTTAAATACAATAGGCTACATATATGCCAGACAGGCAGCGAAAGAATTGGGGAAGAAAGCCATGTATTTGGGTGTGCCCTTTATTGCTGAGTGGTTTAGGAACAAAGGTCATTTTATAAAATCCCAAGTTACAGCTGCAACAGGTGCTATTGCTCTGATTCAGCTGCAGGAGGATATGAAAAAGCAACTTAGTGGAGAAGGAAACTACACCGAGGAAGAGCTTGAGTCATTTGTTCAATCTCACAAGAAATTGATGATCGATTCCCTTTGGAAGCTTAATGTTGCTGATATTGAGGCTACACTTTCCCGTGTTTGTCAAATGGTTCTCCAAGATAATAATGTCAAGAAGGAAGAGCTCCGGGCACGGGCAAAAGGGTTAAAGAATCTTGGTAAAATCTTTCAGAGGGTTAAGTCCACCAATGGAAATGAGAGTGAGGCAGCGGTAAATAGTGTCATGTCTAAGCTGAACGGAAGTGAAATGAGCAATGATACTTGTTCTCCACTTTCTTCTCTTAAATCTTCAGACTATGAAGAACCATCTTACGATTTATCCGCATCACAGCGAAAGAGATGGGTAGGATGTTGGGGTGCATTTTCTTGCTTTGGTTCTCAAAAAGGTGGAAAACGAATCGTACCCGCATCCCGCATACCTGAGGGCAATCCATCAGCTGCCCAGCCAAATGGATCTCAAGCTTCTGGTTTGACCAACCAGGCTACAGCATTGGCTCCATCTCTTCTAGCTCCACCTTCCTCACCAGCATCCTTTACAAACTCTGCTCTCCCCTCCACAGCACAATCGCCCAGTTGTTTCTTGTCACTGTCGGCCAACTCTCCTGGAGGTCCTTCATCCACAATGTTTGCCACTGGACCATATGCTGATGAAACACAACTGGTTTCTCCTCCTGTTTTCTCAACCTTCACCACTGAACCATCTACAGCTCCTCTTACTCCCCCTCCAGAACTTGCTCACCTAACTACACCATCTTCCCCTGATGTCCCATTTGCTCAGTTTCTCTCATCGTCTTTGGATCTCAAAGGTGCTGGTAAGACAAAATATGTTGCTTCTAATGACCTTCAGACAACATATTCACTCTATCCTGGAAGAGCATCATCATCTTTTCTGGAGCAAGAGTTGCCCCCACATTGGGATCCTGCAGTTTCTCCCCAAGATGGCAAATATTCAAGGAGTGGTTCTGGCAGGTTATTTGGGTTTGAGAAAGCTAATAGCCCTACCATGGCATCCCGAGACTCAAATTTCTTCTTCCCAGCTACATTTGCTCAATTCTATTTGGATAATCCACCCTTTCCTCATACTGGTGGGAGGTTAAGTGTTTCAAAGGATTCAGATGTGTACTCTACCACTACAAATGGATATCAAAACAGGCAAAACAAAACTCCAAAACAAGATGTAGAGGAACTTGAAGCTTATAGAGCATCATTCGGATTCAGTGCAGATGAAATTATCAGTACATCACAATATGTGGAGATAACCGATGTCGCAGAGGACGCATTTACTATGACCCCATTCACTTCTAATAAACTTGCTACGGAAGAAAGATTAAGATATGTAGCAATGGATGAAGCACAACATTCATATAGAGCTGACACTCACTTGCAGAGTCAGAGAAGTAGTAAACCAGATTCCGATATTATTGAAAAGGCCACCCAATCTAAAGCACTAACATTGTGCGGTGGATATGAAGACCATACACTCCAAAATCACCGCAATGACATCTTGGGTTCTAGCAGTCCTGGAAACTATTATAATGCTACGGAGGAGGACGAGTTTTCAAAGTTAGGGTTGTCGAAAAATAGCAGGAAATACGAGAAGGGCTTATCTTGCTCTGATGCAGAGATAGAGTATGGGCGGGGGAGCTTGAGAGGAAGCAAGAGAGACTTTTCATGGCGTGACTGA 2451 43.7 MVKDTEYYDVLGVSPTASEAEIKKAYYLKARQVHPDKNLNDPLAAQKFQVLGEAYQVLCDPGQRQAYDAYGKSGVSTDAIIEPAAIFAMLFGSELFEEYIGQLAMASMTSLDIFTEGEQFDAKKLQEKMRIVQKEREDKLAEKLKDRLNQYVQGSKEEFIKHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAMYLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSGEGNYTEEELESFVQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNVKKEELRARAKGLKNLGKIFQRVKSTNGNESEAAVNSVMSKLNGSEMSNDTCSPLSSLKSSDYEEPSYDLSASQRKRWVGCWGAFSCFGSQKGGKRIVPASRIPEGNPSAAQPNGSQASGLTNQATALAPSLLAPPSSPASFTNSALPSTAQSPSCFLSLSANSPGGPSSTMFATGPYADETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPFAQFLSSSLDLKGAGKTKYVASNDLQTTYSLYPGRASSSFLEQELPPHWDPAVSPQDGKYSRSGSGRLFGFEKANSPTMASRDSNFFFPATFAQFYLDNPPFPHTGGRLSVSKDSDVYSTTTNGYQNRQNKTPKQDVEELEAYRASFGFSADEIISTSQYVEITDVAEDAFTMTPFTSNKLATEERLRYVAMDEAQHSYRADTHLQSQRSSKPDSDIIEKATQSKALTLCGGYEDHTLQNHRNDILGSSSPGNYYNATEEDEFSKLGLSKNSRKYEKGLSCSDAEIEYGRGSLRGSKRDFSWRD 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26640297 26652460 + BLOR04853 Blo12g00834 68095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00834 816 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Blo12g00834 816 CDD DnaJ 6 60 IPR001623 -
Blo12g00834 816 Coils Coil 122 142 - -
Blo12g00834 816 Gene3D DnaJ domain 1 84 IPR036869 -
Blo12g00834 816 Pfam DnaJ domain 6 68 IPR001623 -
Blo12g00834 816 Pfam X-domain of DnaJ-containing 133 327 IPR026894 -
Blo12g00834 816 SMART dnaj_3 5 63 IPR001623 -
Blo12g00834 816 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
Blo12g00834 816 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Blo12g00834 816 PRINTS DnaJ domain signature 63 82 IPR001623 -
Blo12g00834 816 PRINTS DnaJ domain signature 8 26 IPR001623 -
Blo12g00834 816 PRINTS DnaJ domain signature 43 63 IPR001623 -
Blo12g00834 816 PRINTS DnaJ domain signature 26 41 IPR001623 -
Blo12g00834 816 MobiDBLite consensus disorder prediction 384 412 - -
Blo12g00834 816 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Blo12g00834 816 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 366 - -
Blo12g00834 816 MobiDBLite consensus disorder prediction 337 356 - -
Blo12g00834 816 Coils Coil 288 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00834 - - - vvi:100259812 629.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00834 Blo18g00226 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00077 Blo-Chr9:1378534 Blo12g00834 Blo-Chr12:26640297 6.60E-41 dispersed
Blo12g00834 Blo-Chr12:26640297 Blo19g00337 Blo-Chr19:22249536 1.29E-39 dispersed
Blo01g01664 Blo-Chr1:56388186 Blo12g00834 Blo-Chr12:26640297 0 transposed
Blo02g00811 Blo-Chr2:28410261 Blo12g00834 Blo-Chr12:26640297 4.40E-125 transposed
Blo18g00226 Blo-Chr18:2226215 Blo12g00834 Blo-Chr12:26640297 2.14E-129 transposed
Blo01g01662 Blo-Chr1:56374969 Blo12g00834 Blo-Chr12:26640297 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g8 . Blo12g00834 . Bda03g00341 Bpe02g00279 Bpe04g00301 Bma04g00310 Bma01g02434 . . . Cma09g00001 . . . . . . . . . . . . . . . . . . . Cone4ag2039 Cone7ag1952 . . . Csa04g02755 . . . . . . . . . . . . Cmo09g00001 . . . Car09g00001 . Cpe02g00001 . . . . . . . Cla11g01866 Cam11g1936 Cec11g1962 Cco11g1976 Clacu11g2101 Cmu11g1903 . . . Chy07g00442 Cme07g00007
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007711 1 1 1 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 0 1 1 1 1 0 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00834 Blo_Chr12 FPKM 36.787777 41.547565 81.672279 79.212822 18.131119 18.296515 19.978323 119.653305 127.940453 128.408676