Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00837 ATGCGCCACTCCCTTTCGTATATAACTCCTCGATCGCCAACTCTCAACTCCCCACCTTCTATCCTTCCCCATATTCAACTTCCGTCTGTCCTTTTCATGGGTTCTTGCCTTTCTTCTTCCTTTGAATCCCTCCCTCCTTCCCCGCCGCCTGCGAAAGTCATCTCCCTCGACGGCTATCTCCACGAATACCCTGTTCCCCTCCTCGTCTCCCACGTTCTTCAGGCTGAGACTTCTTCTTCTCCCGCTTTTTTCGTCTGCAACTCCGATCGTTTGTACTACGACGACCATATTCCGCCTTTGGATTCCGACGAACAACTTCAGCCCAATCAGATTTATTTTGTTCTTCCAACGTCTAAGCTTCAACAGCCCTTGACAGCCTCGAACATGGCGGCATTAGCTGTCAAAGCCAGCGTTGCCCTCCAAAAGGCCTCTACCGATGATAAGGAAGCTCGCCGGCAAAAGCAAGCCCGTATTTCTCCCTTCATATTCATGGAATCCAACGAAAGCCCACCAGAGTTGACCAAAAAAAAGAGCTTACAGAATTCAGATGGCCGTCCTGTAAAGATACCCAGATCCGGCTCTTGTGCAGGATCCCTTGTTGTAGCTTCTCACCCTCCGACTCATTTCCCGGCGACGATGGGGTACGCGATGAGGCGGCAGATGAGGGTGAGCGATGCGAGCGTGCTTAAAGTGAGGCAGTCGGTATCAGCTGGCACCTGTTTGCTGCCATTAGCACCCAAGTCGGAAGACGGGGACCTCATGTTTGTAAGAGCCACTTTCGAACGTGTTATTGGTTCCTCTAATTCTGAATCGTTCTACATGATTAACCCTGTTGGAAGCTCCGGCGAGGAGCTTAGTATCTTTCTACTGAGATCATCAGTTAGAAAAGTAGAGGAGGCAATAAGAGAGGAGAAGGCATTAAGTGGGTCTGTATATTCTGGATAA 945 49.95 MRHSLSYITPRSPTLNSPPSILPHIQLPSVLFMGSCLSSSFESLPPSPPPAKVISLDGYLHEYPVPLLVSHVLQAETSSSPAFFVCNSDRLYYDDHIPPLDSDEQLQPNQIYFVLPTSKLQQPLTASNMAALAVKASVALQKASTDDKEARRQKQARISPFIFMESNESPPELTKKKSLQNSDGRPVKIPRSGSCAGSLVVASHPPTHFPATMGYAMRRQMRVSDASVLKVRQSVSAGTCLLPLAPKSEDGDLMFVRATFERVIGSSNSESFYMINPVGSSGEELSIFLLRSSVRKVEEAIREEKALSGSVYSG 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26668131 26672910 - BLOR04856 Blo12g00837 68098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00837 314 MobiDBLite consensus disorder prediction 167 187 - -
Blo12g00837 314 Pfam PADRE domain 33 166 IPR025322 -
Blo12g00837 314 PANTHER POLY POLYMERASE 33 195 - -
Blo12g00837 314 Pfam Protein of unknown function, DUF617 213 291 IPR006460 GO:0010274
Blo12g00837 314 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 33 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00837 - - - twl:120008860 149.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00453 Blo-Chr6:25651912 Blo12g00837 Blo-Chr12:26668131 3.86E-25 dispersed
Blo12g00837 Blo-Chr12:26668131 Blo07g01242 Blo-Chr7:32522822 2.07E-16 dispersed
Blo12g00837 Blo-Chr12:26668131 Blo16g01046 Blo-Chr16:38916282 4.95E-17 transposed
Blo12g00837 Blo-Chr12:26668131 Blo12g00944 Blo-Chr12:27587512 7.15E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012242 2 1 1 2 1 0 1 0 0 0 0 1 0 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00837 Blo_Chr12 FPKM 11.996616 13.337135 0.078001 0.147615 0.076768 0.095708 0.073822 0.24095 0.0 0.107883