Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00847 ATGACTCGTCCTTTTAGGCTTCTAAACGGTGGTGCGAACTCACCGGCGAGTGACGACCATTTGCCTGTACCTGGTCCGAACGACTCCGACATCGTAATCGTACTCGCCGCTCTTCTCTGTGCCTTAATTTGCGCTCTGGGTCTCATAGCCGTCGCTCGTTGCACCTGGACTCGCCACCTCTCCGGCAGCGGTGGCTCAGCTCCCGCCTCCACTAACCGTAGTCCTCCAACGCCCACATCAAACAAAGGGCTCAAGAAGAAAATTTTAAGGTCTCTCCCAAAAGTCACTTTCACAGCAGAGTCCGACTCTCATCTATCAGACTGCGCGATCTGTCTCGCCGAGTTCGTCACCGGGGACGAAATCAGAGTCCTTCCGCAGTGCGGCCATGTCTTCCACGTGGGCTGCATCGATACGTGGTTCGGATCACATTCCTCCTGCCCTTCTTGCCGGAGGGTTTTGGCGGTATCTAAGTGCCAGAAGTGTGGCGATTTCTCCGCGAGCTCAAGCACTGGCTCGGCAAGTGAAGCCAGATTGAAGGAGAGTCAAGACGATCATTTTGCCTGTTATTCCAATCGTCGGGTGTTATCATATGCACTGGAATTCGGAAGTCAGCATAGATGGATTGGTTGTAATATTGGGGATTTGAACTGGAGCAGGAGCTACCGACTAAATGGCTATAGGTTTTTAGTCAATGCTACTGAGGGTTCAGCCTGCCCCAATTCGGATCAAGATTCGCAGAAGGATGAAGTAATCCAGAGCGGTGATGGGGGAGTGGATTCTAAAGAGCCCATTGGCAAATTTCAGGAGATGATTTGTTCTTCACCTCCCTTGATGTTCTTGATGAAAAACTATTCTGGTAAAGTCGCAATCGGGTTCTGTCTTGCAACACTCATGTTAGCAGTCCTTGTCAGAATGTATGCAGTGAGGAAGGCAAGACGGAGTCATCCTGGATCAGTTGCTGATTTAGTGAGACGAGGACAGCTAAAATCTGATAGAAGAGGCATTTCTAGACCTCTTAAGTACGAAGATCCATTCAACAATCCATTGGTGAAAGTTGGTAAAAGTAATTCAACTGTAGAAATGTGTGGAAAGGTCTATCGATTGGCTCCTGTAACTCTCACCGAAGAGCAACGAGCTATTCATCAGAAACGGAGGTCACGAGCATATCAGTGGAAGAGACCAACAATGTTTCTTAAAGAAGGGGATTTGGTACCGCCCGATGTAGACCCTGATACTGTTAGGTGGATTCCTGCCAATCATCCTTTTGCAACTACAGCTAGTGATATTGATGAAGAGTTAGCCCAGAATAATGTGTATCAAAAGCATGGTGTTCCATTCCGTATTCAAGCTGAGCACGAGGCATTGCAAAGAAAGCTTGAAGCTCTTCAAAATGAAGAAAAAATCAATAAATTAGTTATTGATCAGAGGAATGCCATGGATTTTGAAAGACCATACAAGTCGAAACCAACAGCAAATGAGAAAGCAGAACAGAGTTCCTCCAATGATCAAGTTGGCGACCAGCGGCCTCCTGGGCTGGATACCTCCCCGAGTTCTTATGGAGTTAAATCATCATCCGAAGAACAGCAAAGATTTTAG 1596 47.31 MTRPFRLLNGGANSPASDDHLPVPGPNDSDIVIVLAALLCALICALGLIAVARCTWTRHLSGSGGSAPASTNRSPPTPTSNKGLKKKILRSLPKVTFTAESDSHLSDCAICLAEFVTGDEIRVLPQCGHVFHVGCIDTWFGSHSSCPSCRRVLAVSKCQKCGDFSASSSTGSASEARLKESQDDHFACYSNRRVLSYALEFGSQHRWIGCNIGDLNWSRSYRLNGYRFLVNATEGSACPNSDQDSQKDEVIQSGDGGVDSKEPIGKFQEMICSSPPLMFLMKNYSGKVAIGFCLATLMLAVLVRMYAVRKARRSHPGSVADLVRRGQLKSDRRGISRPLKYEDPFNNPLVKVGKSNSTVEMCGKVYRLAPVTLTEEQRAIHQKRRSRAYQWKRPTMFLKEGDLVPPDVDPDTVRWIPANHPFATTASDIDEELAQNNVYQKHGVPFRIQAEHEALQRKLEALQNEEKINKLVIDQRNAMDFERPYKSKPTANEKAEQSSSNDQVGDQRPPGLDTSPSSYGVKSSSEEQQRF 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26741604 26747482 - BLOR04866 Blo12g00847 68108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00847 531 MobiDBLite consensus disorder prediction 237 258 - -
Blo12g00847 531 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 210 529 IPR034572 GO:0009507|GO:0010020
Blo12g00847 531 MobiDBLite consensus disorder prediction 62 85 - -
Blo12g00847 531 SUPERFAMILY RING/U-box 92 155 - -
Blo12g00847 531 CDD RING-H2_EL5_like 107 150 - -
Blo12g00847 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 155 IPR013083 -
Blo12g00847 531 Pfam Ring finger domain 107 150 IPR001841 -
Blo12g00847 531 MobiDBLite consensus disorder prediction 491 531 - -
Blo12g00847 531 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Blo12g00847 531 MobiDBLite consensus disorder prediction 480 531 - -
Blo12g00847 531 MobiDBLite consensus disorder prediction 1 22 - -
Blo12g00847 531 SMART ring_2 108 149 IPR001841 -
Blo12g00847 531 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00847 Blo-Chr12:26741604 Blo13g00831 Blo-Chr13:31008327 6.03E-29 dispersed
Blo16g00653 Blo-Chr16:25950065 Blo12g00847 Blo-Chr12:26741604 4.15E-17 dispersed
Blo12g00847 Blo-Chr12:26741604 Blo10g00953 Blo-Chr10:28620719 4.72E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00847 - - bhj:120087009 424.476