Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00855 ATGGGTGTTATCCAACTGCCGCAAGCTCTCATATTTTCTCTTCTTCTGAAAAGAACGCGAGAAATCCTAACACACCCACCTTCCAAATTAGTCTCTGCTCGTTATGTTTGTACAGGCCTCCATTCTGGATCCACGGAGTATGTAGTCCTCTTTTCGCGTCTACTTTTAATCGGTGTAGATCTTTTTTTCATCCCCAGAAATATTATGGTCCTTGTCTCCGAATCTCTGATAGCCGTGGTATCTGGGTATTATTCTCCTCCTCCTCCTCCTCCTCCTCGTTCCCTTTTCGGATTGCCATCAGGAATTCGTTTACCCGGACTTTGCCTGAAGCTGTTGATATACTGTCAAAAGATGCACGAAAAGAAAGAGAAGAAGTTCCTCACAGTAGCACCCTTCGAATGTGCATGGCTGAAGGATTTAAGATTTCGAGAAGCAGGTCGGGGCTGTGTGGCTTTTGAAGCTTTTGCCCACAATGATGTTACATTGGTATTCAGGGAGAATGTGGGAAGTCAGCACTACCACTACAAAAGAGACAGTAGCCCTCACTATACTGTTATATTGGGCAGCCACAGGAATCGCCGTCTGAAGATTGAGGTGAATGGAAAAACTGTAGTTGATGTGGAGGGTATTGGGCTTTGCTGTGCTTCTGCTTTTCAGAGCTATTGGATTTGCATCTATGATGGGTTAATAAGTGTTGGTAAAGGGAAATACCCTTTTCAAAATATGGTATTTCAGTGGCTAGATTCGAATCCCAACTGTAGTGTTCGGTATATCGGGCTAAGTAGTTGGGACAAACATGTAGGTTATAGAAATGTCAATGTATTGCCACTTACACAAAATCATGTTTCTCTATGGAAGCATGTAGATAGCGGTGAGTTTGAAGGCGAGGACGATGGGGAAATGGAATTGGAAGATGAAGGCAGAAATTATGATAAATGGGGGCTGGAATATTTCCTTGAGAGTTGGGAATTGGCAGATGTGTTTTTCACAGTTGGTTCAGAAGAAAGAATTGTACCTGCTCATAAGGCAATCTTGGTAGCTTCTGGTAATTTTCCTCTGACTCCTTCAGAGGATGTTATCAAGCTTCAGGGAGTGAGCTATCCAGTTCTTCATGCTCTCCTTCAATATATATATACTGGTCAAACCCAGTTCAAAATGGACTTGGTCTTATACCACAATGGACTTGGCATAGAAAACTTTGATTTGTTGGATCAAATGATATTAATGGTTATTTTGTTCTCTGATATGTTCACGAATGGAATGAGGGAAACAATGTCGTCTGAGGTCTCTTTAGTGGATGTATCCCCAAAAGCTTTCAAGTTGATGCTTGAGTTCATGTATAGTGGGGAGCTCAGTGAGGAAGTCCTTTCTAAGGATTCAAGTGTACTATTGCTCCAACTTCTCTTATTGGCCGATCAATATGGAGTTACATTTCTTCATCGAGAATGCTGCAAAATTCTTTTAGAACATCTCTCAGAGGTGATGAAATGGAGAAGCAAGTTGTGGTTTCAGACTAGTGAAACAAAAGAAGAAATCGCTGTTCTGAGAATGAAATATGACCTGGTGTGTCCAATTCTCCAAGTAGTGTCATCAATTCCGTCATGTAGACTGATTGAAGAAGCGTGTGAAAGAAAGTTTGCAATGCATTTTGATTATTGTACAACTGCAAGTCTTGACTTCGTCATGTTAGACGAGACAGCTTTTGGCAATATCATTCAGCATCCAGATTTAACAGTGACATCAGAGGAAAAAGTTCTAAATGCAATCTTAACATGGGGGAATAAAACAGAGGATTTATGCGGGTGGGAGGTGGTGGATGAACAGATGTTACATTCAACTCCTGAAATGTTTTTTGGGGAGAGGCTTCAGTCTGTTCATGAATTGTTCCGATTCGTTAGATTTCCGTTACTGCCATGCACATTGCTGGAGAAGGTGCGTATTTATGTAAAGCACAAAACGAACAAATTTACCAACAAATTCGCTATTAGGAGGGGTGTAAAGGAGGCCATCAATTACATAGAGCATGGATCCATAATCTCAGAAAACAATACATTTTGTGATGATGACGAGCAGGAATTAACTTTTGTTTTTCACCCAATGTATAGTGTGAGATTTCAATATAGGCGGTCTAGTTACAAGGAGCTCATGCACATTTGTGATGGAGACAGCAATGGAGTTCTGTTCTTTGCGGGCACAGCATATGGAAGGCATCTATGGGTCAATCCTGTTCTTTCAAAGAAAATCACAATCACCGCCAGCAGCCCCCCTTCGAGGTTCACTGATCCGAAGGTTTTGGTCTCGAGAACTTACCAGGGAACATCCTTCGCTGGACCCCGCATTGAAGATGGACGGAATTGTTCATGGTGGATGATCGATATTGGCAAAGATCATCAGCTCATGTGCAACTACTACACGCTGAGACAAGATGGGTCAAGAGCATATATCAGACATTGGAATCTCCAGGCCCCACCACTGATGTTTCAAACCCTTGGAACTTCTGCATTTGCTTCTTCGAGCTCTACGGCTACTTCCGATGAGCTCTTCCTCTTCGGATTACTTGTTTTGAGTTTTTCTTGA 2577 42.03 MGVIQLPQALIFSLLLKRTREILTHPPSKLVSARYVCTGLHSGSTEYVVLFSRLLLIGVDLFFIPRNIMVLVSESLIAVVSGYYSPPPPPPPRSLFGLPSGIRLPGLCLKLLIYCQKMHEKKEKKFLTVAPFECAWLKDLRFREAGRGCVAFEAFAHNDVTLVFRENVGSQHYHYKRDSSPHYTVILGSHRNRRLKIEVNGKTVVDVEGIGLCCASAFQSYWICIYDGLISVGKGKYPFQNMVFQWLDSNPNCSVRYIGLSSWDKHVGYRNVNVLPLTQNHVSLWKHVDSGEFEGEDDGEMELEDEGRNYDKWGLEYFLESWELADVFFTVGSEERIVPAHKAILVASGNFPLTPSEDVIKLQGVSYPVLHALLQYIYTGQTQFKMDLVLYHNGLGIENFDLLDQMILMVILFSDMFTNGMRETMSSEVSLVDVSPKAFKLMLEFMYSGELSEEVLSKDSSVLLLQLLLLADQYGVTFLHRECCKILLEHLSEVMKWRSKLWFQTSETKEEIAVLRMKYDLVCPILQVVSSIPSCRLIEEACERKFAMHFDYCTTASLDFVMLDETAFGNIIQHPDLTVTSEEKVLNAILTWGNKTEDLCGWEVVDEQMLHSTPEMFFGERLQSVHELFRFVRFPLLPCTLLEKVRIYVKHKTNKFTNKFAIRRGVKEAINYIEHGSIISENNTFCDDDEQELTFVFHPMYSVRFQYRRSSYKELMHICDGDSNGVLFFAGTAYGRHLWVNPVLSKKITITASSPPSRFTDPKVLVSRTYQGTSFAGPRIEDGRNCSWWMIDIGKDHQLMCNYYTLRQDGSRAYIRHWNLQAPPLMFQTLGTSAFASSSSTATSDELFLFGLLVLSFS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26819523 26824654 + BLOR04874 Blo12g00855 68116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00855 858 PANTHER OS05G0345500 PROTEIN 411 821 - -
Blo12g00855 858 PANTHER OS05G0345500 PROTEIN 118 385 - -
Blo12g00855 858 SMART BTB_4 325 491 IPR000210 GO:0005515
Blo12g00855 858 Pfam BTB/POZ domain 318 385 IPR000210 GO:0005515
Blo12g00855 858 Pfam BTB/POZ domain 413 490 IPR000210 GO:0005515
Blo12g00855 858 SUPERFAMILY POZ domain 413 489 IPR011333 -
Blo12g00855 858 Gene3D Potassium Channel Kv1.1; Chain A 410 493 IPR011333 -
Blo12g00855 858 Pfam Farnesoic acid 0-methyl transferase 170 267 IPR022041 -
Blo12g00855 858 SUPERFAMILY POZ domain 315 389 IPR011333 -
Blo12g00855 858 Gene3D - 547 673 - -
Blo12g00855 858 CDD BTB_POZ_ZBTB_KLHL-like 324 390 - -
Blo12g00855 858 ProSiteProfiles BTB domain profile. 325 386 IPR000210 GO:0005515
Blo12g00855 858 SMART BACK_2 523 646 IPR011705 -
Blo12g00855 858 ProSiteProfiles BTB domain profile. 412 455 IPR000210 GO:0005515
Blo12g00855 858 CDD BTB_POZ_ZBTB_KLHL-like 413 452 - -
Blo12g00855 858 Gene3D Potassium Channel Kv1.1; Chain A 308 393 IPR011333 -
Blo12g00855 858 Pfam BTB And C-terminal Kelch 529 596 IPR011705 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00855 - - - qsu:112034597 887.486
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01634 Blo12g00855 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00855 Blo-Chr12:26819523 Blo01g00226 Blo-Chr1:2858762 9.44E-07 dispersed
Blo01g01634 Blo-Chr1:56174890 Blo12g00855 Blo-Chr12:26819523 1.44E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00855 Blo_Chr12 FPKM 98.368637 107.961143 59.903908 62.629105 44.466995 44.20644 44.755501 88.505722 85.93586 89.506699