Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00859 ATGGGAGGAGCTCGGGCTCAAGTGAATAAATCTCATAAATCTCGTTTCTCTTCCAAGTCTACTCGGCATCAGCAAAAAACCTCTTTGCAAGAAAAAAGTAAGGCTTTCAAGTCGGACCGAAATGTTGTCAAGGGAGCTCGGGCTGCCCGCATTCAGCGTAGTAAGATGCTGCGGGAGCAAAAAAGAGCTTTACTTTTGAAAGAAAAAAGGGCCTCTTGTGGATCATCAAGTTCCCCGCGTGTTATTGTTCTTTTCGGGCTTGCTTCTTTTGTGGACATCGATTCTCTTGCAGTGGATCTTTTGTCATTATTATCTCCTGGGGGTGCCTCATCGTCAACTGTTGCTTCCTCTGAGTACAAACTCAGGACAACAATACTGAAAGCACCTCATGGAGATTTACTATCCTGTATGGAGATGGCCAAGGTTGCTGATTTAATTGCTTTTGTGGCTTCCGCTAGTACTTTATGTGAAGAGAGCACATCTTACTACATGGACTCATTTGCAAGTCAATGTCTTTCTGTATTGAGGTCACTTGGATTACCAAACACTGCTGTACTTATTCGTGATTTACCTACCGACATGAAAAGAAAGCATGATCTGAAAAAATTGTGTATTTCTAGCATTACTTCTGAATTTCCTGAAGATTGTAAGTTTTATCCCGCAGATTCTAAAGATGAGTTGCACAAGTTCATGTGGCTTTTCAAGGAACAAAGGTTGATGCCCCCTCATTGGAGAAATCAACGGCCATACCTAATGTCTCATAAGGTTGATATAGTAGCTGATGAATGTTCTTCTGGAAAATGCAAGCTTCTCCTTACTGGTTATTTGCGTGCTCACAGTCTCTCAGTGAACCAGTTGGTTCATGTTTCTGGAGGAGGAGATTTTCAGATGTGCAAAATTGAAATTCTCAAGGACCCTCATCCTCTGAACTCAAGAAAAGAACAGGACTTTATGGAATCTGATGATGGAGAGGTCATAAGGTCAATTGTTCCAAATCCTTTGAAGCAGGAGAGTTTGCTTGTTGAGAATACTCCTGATCCTCTTGCTGGAGAGCAGACATGGCCAACTGAGACAGAAATGGCTAAGGCTGATAGAGAAGGGAAAGAGAAGCCTCAAAGGAAGAAACTTCCTCGTGGTACTTCTGATTACCAGGCTGCTTGGATTTTAGATGACACAGATGAGGAATCAGATACTGCTGATGGAGGTGATAATGGAATGGTATTGGATGAAAGAGGGGGAGATTTGACTGATCAGGATGATGCATATCAATCTGACCTCAGTGAGGACCAAAGTTCCCTAAATTTGAAGGATTCGGATGTGGAAACAGATATTGATTCTGTGATGATGGAAGGGGAAAACTTAACCCAAGAGCAGATTAAGGACGAGATTCAAAAAATAAAAGATGAACATGCTGAAGACGAGGAATTCCCGGATGAAGTTGACACTCCATTAGATGTTCCTACCAGGAAACGTTTTGTCAAGTATAGAGGTCTCAAATCATTTAGGACGTCTACATGGGATCCCAAGGAATCTCTACCTCCAGAGTTCGGCAGAATTTTTGCCTTTGATAACTTTGTGAGAACACAGAAGCATGTACTAGCTAAGGCTTTGGGTATGGAGCAAGAGATTAGGGATGACTGTATACCACCGAGCTCATATGCCAGACTGCATGTGAAGGAAGTGCCAATAGATGTTGCTTCCAAATTATGTGCACTAGCAAGGGTTATGCCAGTTACAGTGTGTGGCCTTTTGCAGCACGAGTCTAAGATGTCTGTCCTCCATTTCAGTATAAAGAAGCATGACACATACTGCGCCCCTATCAAAGCAAAGGAAAAATTAATTTTTCATGTTGGCTTTCGACAATTTATTGCAAGGCCAATTTTTTCTACGGACAATATTAATTCCAATAAGCACAAAATGGAGAGGTTTCTCCATGCAGGACGGTTTTCTATAGCTTCAATATATGCTCCAATTTCTTTTCCTCCTCTTCCTTTGGTAGTCCTTAAGAGTGATGCAGATCATCCAGTACCTGCAGTAGCCGCTGTTGGTTCTCTAAGGAGCATTGATCCAGATCGGATAATCCTGAAGAAAATTATTTTATCTGGCTACCCACAAAAAGTGTTGAAGCTGAAAGCCACCGTAAGATACATGTTTCATAATCCAGATGACGTGAGATGGTTCAAGCCTGTTGAAGTGTGGACAAAATGTGGTCGACGTGGGCGCATTAAGGAGCCTGTAGGGACACATGGAGCAATGAAGTGTGTTTTCAATGGGATCCTTCAGCAGCACGATACAGTATGCATGAGCTTGTACAAACGTGCGTATCCCAAGTGGCCAGACCATCGTTTTCCGCTTTTGGAAGCTTGA 2367 42.46 MGGARAQVNKSHKSRFSSKSTRHQQKTSLQEKSKAFKSDRNVVKGARAARIQRSKMLREQKRALLLKEKRASCGSSSSPRVIVLFGLASFVDIDSLAVDLLSLLSPGGASSSTVASSEYKLRTTILKAPHGDLLSCMEMAKVADLIAFVASASTLCEESTSYYMDSFASQCLSVLRSLGLPNTAVLIRDLPTDMKRKHDLKKLCISSITSEFPEDCKFYPADSKDELHKFMWLFKEQRLMPPHWRNQRPYLMSHKVDIVADECSSGKCKLLLTGYLRAHSLSVNQLVHVSGGGDFQMCKIEILKDPHPLNSRKEQDFMESDDGEVIRSIVPNPLKQESLLVENTPDPLAGEQTWPTETEMAKADREGKEKPQRKKLPRGTSDYQAAWILDDTDEESDTADGGDNGMVLDERGGDLTDQDDAYQSDLSEDQSSLNLKDSDVETDIDSVMMEGENLTQEQIKDEIQKIKDEHAEDEEFPDEVDTPLDVPTRKRFVKYRGLKSFRTSTWDPKESLPPEFGRIFAFDNFVRTQKHVLAKALGMEQEIRDDCIPPSSYARLHVKEVPIDVASKLCALARVMPVTVCGLLQHESKMSVLHFSIKKHDTYCAPIKAKEKLIFHVGFRQFIARPIFSTDNINSNKHKMERFLHAGRFSIASIYAPISFPPLPLVVLKSDADHPVPAVAAVGSLRSIDPDRIILKKIILSGYPQKVLKLKATVRYMFHNPDDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQHDTVCMSLYKRAYPKWPDHRFPLLEA 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26837437 26843603 + BLOR04878 Blo12g00859 68120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00859 788 Coils Coil 449 469 - -
Blo12g00859 788 MobiDBLite consensus disorder prediction 343 434 - -
Blo12g00859 788 MobiDBLite consensus disorder prediction 358 377 - -
Blo12g00859 788 MobiDBLite consensus disorder prediction 25 44 - -
Blo12g00859 788 SMART DUF663_2 479 774 IPR007034 -
Blo12g00859 788 SMART aarp2cn2 226 307 IPR012948 GO:0005634|GO:0042254
Blo12g00859 788 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 480 776 IPR007034 -
Blo12g00859 788 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 78 240 IPR030387 -
Blo12g00859 788 MobiDBLite consensus disorder prediction 1 44 - -
Blo12g00859 788 PANTHER RIBOSOME BIOGENESIS PROTEIN 2 780 IPR039761 GO:0042254
Blo12g00859 788 PANTHER PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOG 2 780 - -
Blo12g00859 788 Pfam AARP2CN (NUC121) domain 226 306 IPR012948 GO:0005634|GO:0042254
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00859 K14799 TSR1; pre-rRNA-processing protein TSR1 - jre:109002927 1216.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00187 Blo-Chr1:2559951 Blo12g00859 Blo-Chr12:26837437 4.99E-11 dispersed
Blo12g00859 Blo-Chr12:26837437 Blo15g00726 Blo-Chr15:24071720 1.12E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g102 . Blo12g00859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007063 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 2 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00859 Blo_Chr12 FPKM 91.004791 91.486542 142.289398 146.159103 99.41703 92.399574 95.759415 89.315132 87.327919 91.548973